PDB entry 1ihm

View 1ihm on RCSB PDB site
Description: crystal structure analysis of norwalk virus capsid
Class: Virus
Keywords: Beta-barrel, EF-Tu-LIKE domain caliciviridae, T=3 icosahedral capsid, Icosahedral virus, Virus
Deposited on 2001-04-19, released 2001-05-16
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-07-08.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: 0.26
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Norwalk virus [TaxId:11983]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83884
      • see remark 999 (252)
    Domains in SCOPe 2.01: d1ihma_
  • Chain 'B':
    Compound: capsid protein
    Species: Norwalk virus [TaxId:11983]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83884
      • see remark 999 (252)
    Domains in SCOPe 2.01: d1ihmb_
  • Chain 'C':
    Compound: capsid protein
    Species: Norwalk virus [TaxId:11983]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q83884
      • see remark 999 (252)
    Domains in SCOPe 2.01: d1ihmc_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ihmA (A:)
mmmaskdatssvdgasgagqlvpevnasdplamdpvagsstavatagqvnpidpwiinnf
vqapqgeftispnntpgdvlfdlslgphlnpfllhlsqmyngwvgnmrvrimlagnafta
gkiivscippgfgshnltiaqatlfphviadvrtldpievpledvrnvlfhnndrnqqtm
rlvcmlytplrtgggtgdsfvvagrvmtcpspdfnflflvpptveqktrpftlpnlplss
lsnsraplpissmgispdnvqsvqfqngrctldgrlvgttpvslshvakirgtsngtvin
lteldgtpfhpfegpapigfpdlggcdwhinmtqfghssqtqydvdttpdtfvphlgsiq
angigsgnyvgvlswisppshpsgsqvdlwkipnygssiteathlapsvyppgfgevlvf
fmskmpgpgaynlpcllpqeyishlaseqaptvgeaallhyvdpdtgrnlgefkaypdgf
ltcvpngassgpqqlpingvfvfvswvsrfyqlkpvgtassargrlglrr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ihmA (A:)
dplamdpvagsstavatagqvnpidpwiinnfvqapqgeftispnntpgdvlfdlslgph
lnpfllhlsqmyngwvgnmrvrimlagnaftagkiivscippgfgshnltiaqatlfphv
iadvrtldpievpledvrnvlfhnndrnqqtmrlvcmlytplrtgggtgdsfvvagrvmt
cpspdfnflflvpptveqktrpftlpnlplsslsnsraplpissmgispdnvqsvqfqng
rctldgrlvgttpvslshvakirgtsngtvinlteldgtpfhpfegpapigfpdlggcdw
hinmtqfghssqtqydvdttpdtfvphlgsiqangigsgnyvgvlswisppshpsgsqvd
lwkipnygssiteathlapsvyppgfgevlvffmskmpgpgaynlpcllpqeyishlase
qaptvgeaallhyvdpdtgrnlgefkaypdgfltcvpngassgpqqlpingvfvfvswvs
rfyqlkpvgtas

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ihmB (B:)
mmmaskdatssvdgasgagqlvpevnasdplamdpvagsstavatagqvnpidpwiinnf
vqapqgeftispnntpgdvlfdlslgphlnpfllhlsqmyngwvgnmrvrimlagnafta
gkiivscippgfgshnltiaqatlfphviadvrtldpievpledvrnvlfhnndrnqqtm
rlvcmlytplrtgggtgdsfvvagrvmtcpspdfnflflvpptveqktrpftlpnlplss
lsnsraplpissmgispdnvqsvqfqngrctldgrlvgttpvslshvakirgtsngtvin
lteldgtpfhpfegpapigfpdlggcdwhinmtqfghssqtqydvdttpdtfvphlgsiq
angigsgnyvgvlswisppshpsgsqvdlwkipnygssiteathlapsvyppgfgevlvf
fmskmpgpgaynlpcllpqeyishlaseqaptvgeaallhyvdpdtgrnlgefkaypdgf
ltcvpngassgpqqlpingvfvfvswvsrfyqlkpvgtassargrlglrr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ihmB (B:)
ssvdgasgagqlvpevnasdplamdpvagsstavatagqvnpidpwiinnfvqapqgeft
ispnntpgdvlfdlslgphlnpfllhlsqmyngwvgnmrvrimlagnaftagkiivscip
pgfgshnltiaqatlfphviadvrtldpievpledvrnvlfhnndrnqqtmrlvcmlytp
lrtgggtgdsfvvagrvmtcpspdfnflflvpptveqktrpftlpnlplsslsnsraplp
issmgispdnvqsvqfqngrctldgrlvgttpvslshvakirgtsngtvinlteldgtpf
hpfegpapigfpdlggcdwhinmtqfghssqtqydvdttpdtfvphlgsiqangigsgny
vgvlswisppshpsgsqvdlwkipnygssiteathlapsvyppgfgevlvffmskmpgpg
aynlpcllpqeyishlaseqaptvgeaallhyvdpdtgrnlgefkaypdgfltcvpngas
sgpqqlpingvfvfvswvsrfyqlkpvgtas

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1ihmC (C:)
mmmaskdatssvdgasgagqlvpevnasdplamdpvagsstavatagqvnpidpwiinnf
vqapqgeftispnntpgdvlfdlslgphlnpfllhlsqmyngwvgnmrvrimlagnafta
gkiivscippgfgshnltiaqatlfphviadvrtldpievpledvrnvlfhnndrnqqtm
rlvcmlytplrtgggtgdsfvvagrvmtcpspdfnflflvpptveqktrpftlpnlplss
lsnsraplpissmgispdnvqsvqfqngrctldgrlvgttpvslshvakirgtsngtvin
lteldgtpfhpfegpapigfpdlggcdwhinmtqfghssqtqydvdttpdtfvphlgsiq
angigsgnyvgvlswisppshpsgsqvdlwkipnygssiteathlapsvyppgfgevlvf
fmskmpgpgaynlpcllpqeyishlaseqaptvgeaallhyvdpdtgrnlgefkaypdgf
ltcvpngassgpqqlpingvfvfvswvsrfyqlkpvgtassargrlglrr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ihmC (C:)
dplamdpvagsstavatagqvnpidpwiinnfvqapqgeftispnntpgdvlfdlslgph
lnpfllhlsqmyngwvgnmrvrimlagnaftagkiivscippgfgshnltiaqatlfphv
iadvrtldpievpledvrnvlfhnndrnqqtmrlvcmlytplrtgggtgdsfvvagrvmt
cpspdfnflflvpptveqktrpftlpnlplsslsnsraplpissmgispdnvqsvqfqng
rctldgrlvgttpvslshvakirgtsngtvinlteldgtpfhpfegpapigfpdlggcdw
hinmtqfghssqtqydvdttpdtfvphlgsiqangigsgnyvgvlswisppshpsgsqvd
lwkipnygssiteathlapsvyppgfgevlvffmskmpgpgaynlpcllpqeyishlase
qaptvgeaallhyvdpdtgrnlgefkaypdgfltcvpngassgpqqlpingvfvfvswvs
rfyqlkpvgtas