PDB entry 1icf
View 1icf on RCSB PDB site
Description: crystal structure of MHC class II associated p41 II fragment in complex with cathepsin l
Class: hydrolase
Keywords: cysteine proteinase, cathepsin, MHC class II, invariant chain, thyroglobulin type-1 domain, hydrolase
Deposited on
1999-01-07, released
2000-01-12
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: protein (cathepsin l: heavy chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1icf.1 - Chain 'B':
Compound: protein (cathepsin l: light chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1icf.1 - Chain 'C':
Compound: protein (cathepsin l: heavy chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1icf.2 - Chain 'D':
Compound: protein (cathepsin l: light chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1icf.2 - Chain 'I':
Compound: protein (invariant chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1icfi_ - Chain 'J':
Compound: protein (invariant chain)
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1icfj_ - Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1icfA (A:)
aprsvdwrekgyvtpvknqgqcgscwafsatgalegqmfrktgrlislseqnlvdcsgpq
gnegcngglmdyafqyvqdnggldseesypyeateesckynpkysvandtgfvdipkqek
almkavatvgpisvaidaghesflfykegiyfepdcssedmdhgvlvvgygfest
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1icfB (B:)
nnkywlvknswgeewgmggyvkmakdrrnhcgiasaasyptv
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1icfC (C:)
aprsvdwrekgyvtpvknqgqcgscwafsatgalegqmfrktgrlislseqnlvdcsgpq
gnegcngglmdyafqyvqdnggldseesypyeateesckynpkysvandtgfvdipkqek
almkavatvgpisvaidaghesflfykegiyfepdcssedmdhgvlvvgygfest
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1icfD (D:)
nnkywlvknswgeewgmggyvkmakdrrnhcgiasaasyptv
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>1icfI (I:)
ltkcqeevshipavhpgsfrpkcdengnylplqcygsigycwcvfpngtevpntrsrghh
ncses
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>1icfJ (J:)
ltkcqeevshipavhpgsfrpkcdengnylplqcygsigycwcvfpngtevpntrsrghh
ncses