PDB entry 1i8k
View 1i8k on RCSB PDB site
Description: crystal structure of dsfv mr1 in complex with the peptide antigen of the mutant epidermal growth factor receptor, egfrviii, at liquid nitrogen temperature
Class: immune system
Keywords: antibody-peptide complex, immunoglobulin fold, peptide antigen, type II' beta turn., IMMUNE SYSTEM
Deposited on
2001-03-14, released
2002-03-14
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.172
AEROSPACI score: 0.51
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: epidermal growth factor receptor antibody mr1scfv light chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1i8ka_ - Chain 'B':
Compound: epidermal growth factor receptor antibody mr1scfv heavy chain
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1i8kb_ - Chain 'C':
Compound: epidermal growth factor receptor, egfrviii peptide antigen
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1i8kA (A:)
dieltqspaslsvatgekvtircmtstdidddmnwyqqkpgeppkflisegntlrpgvps
rfsssgtgtdfvftientlsedvgdyyclqsfnvpltfgcgtkleik
Sequence, based on observed residues (ATOM records): (download)
>1i8kA (A:)
dieltqspaslsvatgekvtircmtstdidddmnwyqqkpgeppkflisegntlrpgvps
rfsssgtgtdfvftientlsedvgdyyclqsfnvpltfgcgtklei
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1i8kB (B:)
qvklqqsggglvkpgaslklscvtsgftfrkfgmswvrqtsdkclewvasistggyntyy
sdnvkgrftisrenakntlylqmsslksedtalyyctrgysstsyamdywgqgttvtvsg
iegr
Sequence, based on observed residues (ATOM records): (download)
>1i8kB (B:)
qvklqqsggglvkpgaslklscvtsgftfrkfgmswvrqtsdkclewvasistggyntyy
sdnvkgrftisrenakntlylqmsslksedtalyyctrgysstsyamdywgqgttvtvs
- Chain 'C':
No sequence available.