PDB entry 1hqm

View 1hqm on RCSB PDB site
Description: crystal structure of thermus aquaticus core rna polymerase-includes complete structure with side-chains (except for disordered regions)- further refined from original deposition-contains additional sequence information
Deposited on 2000-12-18, released 2001-02-07
The last revision prior to the SCOP 1.71 freeze date was dated 2001-02-07, with a file datestamp of 2001-02-07.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.3
AEROSPACI score: -0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Domains in SCOP 1.71: d1hqma_
  • Chain 'B':
    Domains in SCOP 1.71: d1hqmb_
  • Chain 'C':
    Domains in SCOP 1.71: d1hqmc_
  • Chain 'D':
    Domains in SCOP 1.71: d1hqmd_
  • Chain 'E':
    Domains in SCOP 1.71: d1hqme_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1hqmA (A:)
mlesklkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyied
vlhefstipgvkedvveiilnlkelvvrfldprwrttlilraegpkevravdftpsadve
imnpdlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqv
edtrlgqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpeasllptpevskg
ekresaeedldlpleelglstrvlhslkeegiesvrallalnlkdlrnipgigersleei
rqalakkgftlke

    Sequence, based on observed residues (ATOM records): (download) 
    >1hqmA (A:)
lkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyiedvlhef
stipgvkedvveiilnlkelvvrfldprwrttlilraegpkevravdftpsadveimnpd
lhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqvedtrl
gqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1hqmB (B:)
mlesklkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyied
vlhefstipgvkedvveiilnlkelvvrfldprwrttlilraegpkevravdftpsadve
imnpdlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqv
edtrlgqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpeasllptpevskg
ekresaeedldlpleelglstrvlhslkeegiesvrallalnlkdlrnipgigersleei
rqalakkgftlke

    Sequence, based on observed residues (ATOM records): (download) 
    >1hqmB (B:)
esklkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyiedvl
hefstipgvkedvveiilnlkelvvrfldprwrttlilraegpkevravdftpsadveim
npdlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqved
trlgqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpeasl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1hqmC (C:)
mkikrfgrireviplpplteiqvesykkalqadvppekrenvgiqaafketfpieegdkg
kgglvldfleyrigdppfsqdecrekdltyqaplyarlqlihkdtglikedevflghlpl
mtedgsfiingadrvivsqihrspgvyftpdparpgryiasiiplpkrgpwidleveasg
vvtmkvnkrkfplvlllrvlgydqetlvrelsaygdlvqglldeavlamrpeeamvrlft
llrpgdppkkdkalaylfglladpkrydlgeagrykaeeklgvglsgrtlvrfedgefkd
evflptlrylfaltagvpghevddidhlgnrrirtvgelmadqfrvglarlargvrermv
mgspdtltpaklvnsrpleaalreffsrsqlsqfkdetnplsslrhkrrisalgpggltr
eragfdvrdvhrthygricpvetpeganiglitslaayarvdalgfirtpyrrvkngvvt
eevvymtaseedrytiaqantplegdriatdrvvarrrgepvivapeevefmdvspkqvf
slntnlipflehddanralmgsnmqtqavpliraqapvvmtgleervvrdslaalyaeed
gevvkvdgtriavryedgrlvehplrryarsnqgtafdqrprvrvgqrvkkgdlladgpa
seegflalgqnvlvaimpfdgynfedaiviseellkrdfytsihieryeieardtklgpe
ritrdiphlseaalrdldeegivrigaevkpgdilvgrtsfkgeqepspeerllrsifge
kardvkdtslrvppgeggivvgrlrlrrgdpgvelkpgvrevvrvfvaqkrklqvgdkla
nrhgnkgvvakilpvedmphlpdgtpvdvilnplgvpsrmnlgqilethlglagyflgqr
yispvfdgatepeikellaeafnlyfgkrqgegfgvdkrekevlaraeklglvspgkspe
eqlkelfdlgkvvlydgrtgepfegpivvgqmfimklyhmvedkmharstgpyslitqqp
lggkaqfggqrfgemevwaleaygaahtlqemltiksddiegrnaayqaiikgedvpeps
vpesfrvlvkelqalaldvqtldekdnpvdifeglaskr

    Sequence, based on observed residues (ATOM records): (download) 
    >1hqmC (C:)
kikrfgrireviplpplteiqvesykkalqadvppekrenvgiqaafketfpieegdkgk
gglvldfleyrigdppfsqdecrekdltyqaplyarlqlihkdtglikedevflghlplm
tedgsfiingadrvivsqihrspgvyftpdparpgryiasiiplpkrgpwidleveasgv
vtmkvnkrkfplvlllrvlgydqetlvrelsaygdlvqglldeavlamrpeeamvrlftl
lrpgdppkkdkalaylfglladpkrydlgeagrykaeeklgvglsgrtlvrfedgefkde
vflptlrylfaltagvpghevddidhlgnrrirtvgelmadqfrvglarlargvrermvm
gspdtltpaklvnsrpleaalreffsrsqlsqfkdetnplsslrhkrrisalgpggltre
ragfdvrdvhrthygricpvetpeganiglitslaayarvdalgfirtpyrrvkngvvte
evvymtaseedrytiaqantplegdriatdrvvarrrgepvivapeevefmdvspkqvfs
lntnlipflehddanralmgsnmqtqavpliraqapvvmtgleervvrdslaalyaeedg
evvkvdgtriavryedgrlvhplrryarsnqgtafdqrprvrvgqrvkkgdlladgpase
egflalgqnvlvaimpfdgynfedaiviseellkrdfytsihieryeieardtklgperi
trdiphlseaalrdldeegivrigaevkpgdilvgrtsfkgeqepspeerllrsifgeka
rdvkdtslrvppgeggivvgrlrlrrgdpgvelkpgvrevvrvfvaqkrklqvgdklanr
hgnkgvvakilpvedmphlpdgtpvdvilnplgvpsrmnlgqilethlglagyflgqryi
spvfdgatepeikellaeafnlyfgkrqgegfgvdkrekevlaraeklglvspgkspeeq
lkelfdlgkvvlydgrtgepfegpivvgqmfimklyhmvedkmharstgpyslitqqplg
gkaqfggqrfgemevwaleaygaahtlqemltiksddiegrnaayqaiikgedvpepsvp
esfrvlvkelqalaldvqtldekdnpvdifegl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1hqmD (D:)
mkkevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecac
gkykrqrfegkvcercgvevtrsivrryrmghielatpaahiwfvkdvpskigtlldlfa
teleqvlyfnkyivldpkgavldgvpvekrqlltdxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxidarmgaeaiqellkeldleklerelleemkhpsrarrakarkrlevvr
afldsgnrpewmileavpvlppdlrpmvqvdggrfatsdlndlyrrlinrnnrlkkllaq
gapeiiirnekrmlqeavdavidngrrgspvtnpgserplrsltdilsgkqgrfrqnllg
krvdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkmeekafapnvkaarrmlerq
rdikdevwdaleevihgkvvllnraptlhrlgiqafqpvlvegqsiqlhplvceafnadf
dgdqmavhvplssfaqaeariqmlsahnllspasgeplakpsrdiilglyyitqvrkekk
gagmafatpeealaayergevalnapivvagretsvgrlkfvfanpdeallavahglldl
qdtvttrylgrrletnpgrilfarivgeavgdekvaqeliqmdvpqeknslkdlvyqafl
rlgmektarlldalkyygftlsttsgiitigiddavipeekqryleeadrklrqieqaye
mgfltdrerydqviqlwtettekvtqavfnnfeenypfnplyvmaqsgargnpqqirqlc
gmrglmqkpsgetfevpvrssfregltvleyfisshgarkggadtalrtadsgyltrklv
dvaheivvreadcgttkyisvplfqmdevtrtlrlrkrsdiesglygrvlarevealgrr
leegrylsledvhflikaaeagevrevpvrspltcqtrygvcqkcygydlsmarpvsige
avgvvaaesigepgtqltmrtfhtggvavgtditqglprvielfearrpkakaviseidg
vvrieegedrlsvfvesegfskeyklpkdarllvkdgdyveagqpltrgaidphqlleak
gpeaverylvdeiqkvyraqgvklhdkhieivvrqmlkyvevtdpgdspllegqvlekwd
vealnerliaegkvpvawkpllmgvtksalstkswlsaasfqntthvlteaaiagkkdel
iglkenvilgrlipagtgsdfvrftqvvdqrtlkaieearkeaveakekeaprrpvrreq
pgkgl

    Sequence, based on observed residues (ATOM records): (download) 
    >1hqmD (D:)
kevrkvrialaspekirswsygevekpetegkvcercgvevtrsivrryrmghielatpa
ahiwfvkdvpskigtlldlfateleqvlyfnkyivldpkgavldgvpvekrqlltdxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxidarmgaeaiqellkeldleklerelle
emkhpsrarrakarkrlevvrafldsgnrpewmileavpvlppdatsdlndlyrrlinrn
nrlkkllaqgapeiiirnekrmlqeavdavidngrrgspvtnpgserplrsltdilsgkq
grfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkmeekafapnvk
aarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgiqafqpvlvegqsiqlhpl
vceafnadfdgdqmavhvplssfaqaeariqmlsahnllspasgeplakpsrdiilglyy
itqvrkekkgagmafatpeealaayergevalnapivvagretsvgrlkfvfanpdeall
avahglldlqdtvttrylgrrletnpgrilfarivgeavgdekvaqeliqmdvpqeknsl
kdlvyqaflrlgmektarlldalkyygftlsttsgiitigiddavipeekqryleeadrk
lrqieqayemgfltdrerydqviqlwtettekvtqavfnnfeenypfnplyvmaqsgarg
npqqirqlcgmrglmqkpsgetfevpvrssfregltvleyfisshgarkggadtalrtad
sgyltrklvdvaheivvreadcgttkyisvplfqmdevtrtlrlrkrsdiesglygrvla
revealgrrleegrylsledvhflikaaeagevrevpvrspltcqtrygvcqkcygydls
marpvsigeavgvvaaesigepgtqltmrtgtditqglprvielfearrpkakaviseid
gvvrieegedrlsvfvesegfskeyklpkdarllvkdgdyveagqpltrgaidphqllea
kgpeaverylvdeiqkvyraqgvklhdkhieivvrqmlkyvevtdpgdspllegqvlekw
dvealnerliavpvawkpllmgvtksalstkswlsaasfqntthvlteaaiagkkdelig
lkenvilgrlipagtgsdfvrftqvvdqrtlkaie

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1hqmE (E:)
maepgidklfgmvdskyrltvvvakraqqllrhrfkntvlepeerpkmrtleglyddpna
vtwamkelltgrlffgenlvpedrlqkemerlypteeea

    Sequence, based on observed residues (ATOM records): (download) 
    >1hqmE (E:)
maepgidklfgmvdskyrltvvvakraqqllrhrfkntvlepeerpkmrtleglyddpna
vtwamkelltgrlffgenlvpedrlqkemerlypteee