PDB entry 1hqm

View 1hqm on RCSB PDB site
Description: crystal structure of thermus aquaticus core rna polymerase-includes complete structure with side-chains (except for disordered regions)- further refined from original deposition-contains additional sequence information
Deposited on 2000-12-18, released 2001-02-07
The last revision prior to the SCOP 1.59 freeze date was dated 2001-02-07, with a file datestamp of 2001-02-07.
Experiment type: XRAY
Resolution: 3.3 Å
R-factor: 0.3
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Domains in SCOP 1.59: d1hqma_
  • Chain 'B':
    Domains in SCOP 1.59: d1hqmb_
  • Chain 'C':
    Domains in SCOP 1.59: d1hqmc_
  • Chain 'D':
    Domains in SCOP 1.59: d1hqmd_
  • Chain 'E':
    Domains in SCOP 1.59: d1hqme_

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1hqmA (A:)
    lkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyiedvlhef
    stipgvkedvveiilnlkelvvrfldprwrttlilraegpkevravdftpsadveimnpd
    lhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqvedtrl
    gqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpe
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1hqmB (B:)
    esklkapvftattqgdhygefvleplergfgvtlgnplrrillssipgtavtsvyiedvl
    hefstipgvkedvveiilnlkelvvrfldprwrttlilraegpkevravdftpsadveim
    npdlhiatleeggklymevrvdrgvgyvpaerhgikdrinaipvdaifspvrrvafqved
    trlgqrtdldkltlriwtdgsvtplealnqavailkehlnyfanpeasl
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1hqmC (C:)
    kikrfgrireviplpplteiqvesykkalqadvppekrenvgiqaafketfpieegdkgk
    gglvldfleyrigdppfsqdecrekdltyqaplyarlqlihkdtglikedevflghlplm
    tedgsfiingadrvivsqihrspgvyftpdparpgryiasiiplpkrgpwidleveasgv
    vtmkvnkrkfplvlllrvlgydqetlvrelsaygdlvqglldeavlamrpeeamvrlftl
    lrpgdppkkdkalaylfglladpkrydlgeagrykaeeklgvglsgrtlvrfedgefkde
    vflptlrylfaltagvpghevddidhlgnrrirtvgelmadqfrvglarlargvrermvm
    gspdtltpaklvnsrpleaalreffsrsqlsqfkdetnplsslrhkrrisalgpggltre
    ragfdvrdvhrthygricpvetpeganiglitslaayarvdalgfirtpyrrvkngvvte
    evvymtaseedrytiaqantplegdriatdrvvarrrgepvivapeevefmdvspkqvfs
    lntnlipflehddanralmgsnmqtqavpliraqapvvmtgleervvrdslaalyaeedg
    evvkvdgtriavryedgrlvehplrryarsnqgtafdqrprvrvgqrvkkgdlladgpas
    eegflalgqnvlvaimpfdgynfedaiviseellkrdfytsihieryeieardtklgper
    itrdiphlseaalrdldeegivrigaevkpgdilvgrtsfkgeqepspeerllrsifgek
    ardvkdtslrvppgeggivvgrlrlrrgdpgvelkpgvrevvrvfvaqkrklqvgdklan
    rhgnkgvvakilpvedmphlpdgtpvdvilnplgvpsrmnlgqilethlglagyflgqry
    ispvfdgatepeikellaeafnlyfgkrqgegfgvdkrekevlaraeklglvspgkspee
    qlkelfdlgkvvlydgrtgepfegpivvgqmfimklyhmvedkmharstgpyslitqqpl
    ggkaqfggqrfgemevwaleaygaahtlqemltiksddiegrnaayqaiikgedvpepsv
    pesfrvlvkelqalaldvqtldekdnpvdifegl
    

    Sequence, based on observed residues (ATOM records): (download)
    >1hqmC (C:)
    kikrfgrireviplpplteiqvesykkalqadvppekrenvgiqaafketfpieegdkgk
    gglvldfleyrigdppfsqdecrekdltyqaplyarlqlihkdtglikedevflghlplm
    tedgsfiingadrvivsqihrspgvyftpdparpgryiasiiplpkrgpwidleveasgv
    vtmkvnkrkfplvlllrvlgydqetlvrelsaygdlvqglldeavlamrpeeamvrlftl
    lrpgdppkkdkalaylfglladpkrydlgeagrykaeeklgvglsgrtlvrfedgefkde
    vflptlrylfaltagvpghevddidhlgnrrirtvgelmadqfrvglarlargvrermvm
    gspdtltpaklvnsrpleaalreffsrsqlsqfkdetnplsslrhkrrisalgpggltre
    ragfdvrdvhrthygricpvetpeganiglitslaayarvdalgfirtpyrrvkngvvte
    evvymtaseedrytiaqantplegdriatdrvvarrrgepvivapeevefmdvspkqvfs
    lntnlipflehddanralmgsnmqtqavpliraqapvvmtgleervvrdslaalyaeedg
    evvkvdgtriavryedgrlvhplrryarsnqgtafdqrprvrvgqrvkkgdlladgpase
    egflalgqnvlvaimpfdgynfedaiviseellkrdfytsihieryeieardtklgperi
    trdiphlseaalrdldeegivrigaevkpgdilvgrtsfkgeqepspeerllrsifgeka
    rdvkdtslrvppgeggivvgrlrlrrgdpgvelkpgvrevvrvfvaqkrklqvgdklanr
    hgnkgvvakilpvedmphlpdgtpvdvilnplgvpsrmnlgqilethlglagyflgqryi
    spvfdgatepeikellaeafnlyfgkrqgegfgvdkrekevlaraeklglvspgkspeeq
    lkelfdlgkvvlydgrtgepfegpivvgqmfimklyhmvedkmharstgpyslitqqplg
    gkaqfggqrfgemevwaleaygaahtlqemltiksddiegrnaayqaiikgedvpepsvp
    esfrvlvkelqalaldvqtldekdnpvdifegl
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1hqmD (D:)
    kevrkvrialaspekirswsygevekpetinyrtlkperdglfderifgpikdyecacgk
    ykrqrfegkvcercgvevtrsivrryrmghielatpaahiwfvkdvpskigtlldlfate
    leqvlyfnkyivldpkgavldgvpvekrqlltdxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxidarmgaeaiqellkeldleklerelleemkhpsrarrakarkrlevvraf
    ldsgnrpewmileavpvlppdlrpmvqvdggrfatsdlndlyrrlinrnnrlkkllaqga
    peiiirnekrmlqeavdavidngrrgspvtnpgserplrsltdilsgkqgrfrqnllgkr
    vdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkmeekafapnvkaarrmlerqrd
    ikdevwdaleevihgkvvllnraptlhrlgiqafqpvlvegqsiqlhplvceafnadfdg
    dqmavhvplssfaqaeariqmlsahnllspasgeplakpsrdiilglyyitqvrkekkga
    gmafatpeealaayergevalnapivvagretsvgrlkfvfanpdeallavahglldlqd
    tvttrylgrrletnpgrilfarivgeavgdekvaqeliqmdvpqeknslkdlvyqaflrl
    gmektarlldalkyygftlsttsgiitigiddavipeekqryleeadrklrqieqayemg
    fltdrerydqviqlwtettekvtqavfnnfeenypfnplyvmaqsgargnpqqirqlcgm
    rglmqkpsgetfevpvrssfregltvleyfisshgarkggadtalrtadsgyltrklvdv
    aheivvreadcgttkyisvplfqmdevtrtlrlrkrsdiesglygrvlarevealgrrle
    egrylsledvhflikaaeagevrevpvrspltcqtrygvcqkcygydlsmarpvsigeav
    gvvaaesigepgtqltmrtfhtggvavgtditqglprvielfearrpkakaviseidgvv
    rieegedrlsvfvesegfskeyklpkdarllvkdgdyveagqpltrgaidphqlleakgp
    eaverylvdeiqkvyraqgvklhdkhieivvrqmlkyvevtdpgdspllegqvlekwdve
    alnerliaegkvpvawkpllmgvtksalstkswlsaasfqntthvlteaaiagkkdelig
    lkenvilgrlipagtgsdfvrftqvvdqrtlkaie
    

    Sequence, based on observed residues (ATOM records): (download)
    >1hqmD (D:)
    kevrkvrialaspekirswsygevekpetegkvcercgvevtrsivrryrmghielatpa
    ahiwfvkdvpskigtlldlfateleqvlyfnkyivldpkgavldgvpvekrqlltdxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxidarmgaeaiqellkeldleklerelle
    emkhpsrarrakarkrlevvrafldsgnrpewmileavpvlppdatsdlndlyrrlinrn
    nrlkkllaqgapeiiirnekrmlqeavdavidngrrgspvtnpgserplrsltdilsgkq
    grfrqnllgkrvdysgrsvivvgpqlklhqcglpkrmalelfkpfllkkmeekafapnvk
    aarrmlerqrdikdevwdaleevihgkvvllnraptlhrlgiqafqpvlvegqsiqlhpl
    vceafnadfdgdqmavhvplssfaqaeariqmlsahnllspasgeplakpsrdiilglyy
    itqvrkekkgagmafatpeealaayergevalnapivvagretsvgrlkfvfanpdeall
    avahglldlqdtvttrylgrrletnpgrilfarivgeavgdekvaqeliqmdvpqeknsl
    kdlvyqaflrlgmektarlldalkyygftlsttsgiitigiddavipeekqryleeadrk
    lrqieqayemgfltdrerydqviqlwtettekvtqavfnnfeenypfnplyvmaqsgarg
    npqqirqlcgmrglmqkpsgetfevpvrssfregltvleyfisshgarkggadtalrtad
    sgyltrklvdvaheivvreadcgttkyisvplfqmdevtrtlrlrkrsdiesglygrvla
    revealgrrleegrylsledvhflikaaeagevrevpvrspltcqtrygvcqkcygydls
    marpvsigeavgvvaaesigepgtqltmrtgtditqglprvielfearrpkakaviseid
    gvvrieegedrlsvfvesegfskeyklpkdarllvkdgdyveagqpltrgaidphqllea
    kgpeaverylvdeiqkvyraqgvklhdkhieivvrqmlkyvevtdpgdspllegqvlekw
    dvealnerliavpvawkpllmgvtksalstkswlsaasfqntthvlteaaiagkkdelig
    lkenvilgrlipagtgsdfvrftqvvdqrtlkaie
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1hqmE (E:)
    maepgidklfgmvdskyrltvvvakraqqllrhrfkntvlepeerpkmrtleglyddpna
    vtwamkelltgrlffgenlvpedrlqkemerlypteee