PDB entry 1hq3

View 1hq3 on RCSB PDB site
Description: crystal structure of the histone-core-octamer in kcl/phosphate
Class: DNA binding protein
Keywords: histone-core octamer, nucleosome, chromatin, structural elements, histone-tail guide helices, tether structures, Cl and Phosphate ions, waters, DNA BINDING PROTEIN
Deposited on 2000-12-14, released 2001-01-24
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.214
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h2a-IV
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1hq3a_
  • Chain 'B':
    Compound: histone h2b
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1hq3b_
  • Chain 'C':
    Compound: histone h3
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1hq3c_
  • Chain 'D':
    Compound: histone h4-vi
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1hq3d_
  • Chain 'E':
    Compound: histone h2a-IV
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1hq3e_
  • Chain 'F':
    Compound: histone h2b
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1hq3f_
  • Chain 'G':
    Compound: histone h3
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1hq3g_
  • Chain 'H':
    Compound: histone h4-vi
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1hq3h_
  • Heterogens: PO4, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1hq3A (A:)
msgrgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
aeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkk
tdshkakak

    Sequence, based on observed residues (ATOM records): (download) 
    >1hq3A (A:)
kaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaard
nkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1hq3B (B:)
mpepaksapapkkgskkavtktqkkgdkkrkksrkesysiyvykvlkqvhpdtgisskam
gimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
kytssk

    Sequence, based on observed residues (ATOM records): (download) 
    >1hq3B (B:)
rkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsr
eiqtavrlllpgelakhavsegtkavtkytss

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1hq3C (C:)
martkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkste
llirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcaihakrvti
mpkdiqlarrirgera

    Sequence, based on observed residues (ATOM records): (download) 
    >1hq3C (C:)
yrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseayl
vglfedtnlcaihakrvtimpkdiqlarrirgera

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1hq3D (D:)
msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1hq3D (D:)
kvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakrk
tvtamdvvyalkrqgrtlygfgg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1hq3E (E:)
msgrgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
aeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkk
tdshkakak

    Sequence, based on observed residues (ATOM records): (download) 
    >1hq3E (E:)
aksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaardn
kktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1hq3F (F:)
mpepaksapapkkgskkavtktqkkgdkkrkksrkesysiyvykvlkqvhpdtgisskam
gimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
kytssk

    Sequence, based on observed residues (ATOM records): (download) 
    >1hq3F (F:)
rkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsr
eiqtavrlllpgelakhavsegtkavtkytssk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1hq3G (G:)
martkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkste
llirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcaihakrvti
mpkdiqlarrirgera

    Sequence, based on observed residues (ATOM records): (download) 
    >1hq3G (G:)
phryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqease
aylvglfedtnlcaihakrvtimpkdiqlarrirgera

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1hq3H (H:)
msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1hq3H (H:)
rkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtytehakr
ktvtamdvvyalkrqgrtlygfgg