PDB entry 1hjb

View 1hjb on RCSB PDB site
Description: crystal structure of runx-1/aml1/cbfalpha runt domain and c/ebpbeta bzip homodimer bound to a DNA fragment from the csf-1r promoter
Class: transcription/DNA
Keywords: TRANSCRIPTION/DNA, PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR, BZIP, RUNX, RUNT, C/EBP, CBF, CORE BINDING FACTOR, AML1, AML, TRANSCRIPTION-DNA complex
Deposited on 2001-01-11, released 2001-03-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-08, with a file datestamp of 2019-05-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ccaat/enhancer binding protein beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hjba_
  • Chain 'B':
    Compound: ccaat/enhancer binding protein beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hjbb_
  • Chain 'C':
    Compound: runt-related transcription factor 1
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hjbc_
  • Chain 'D':
    Compound: ccaat/enhancer binding protein beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hjbd_
  • Chain 'E':
    Compound: ccaat/enhancer binding protein beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hjbe_
  • Chain 'F':
    Compound: runt-related transcription factor 1
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1hjbf_
  • Chain 'G':
    Compound: DNA (5'-(*gp*ap*ap*gp*ap*tp*tp*tp*cp*cp* ap*ap*ap*cp*tp*cp*tp*gp*tp*gp*gp*tp*tp*gp*cp*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'H':
    Compound: DNA (5'-(*cp*cp*gp*cp*ap*ap*cp*cp*ap*cp* ap*gp*ap*gp*tp*tp*tp*gp*gp*ap*ap*ap*tp*cp*tp*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'I':
    Compound: DNA (5'-(*gp*ap*ap*gp*ap*tp*tp*tp*cp*cp* ap*ap*ap*cp*tp*cp*tp*gp*tp*gp*gp*tp*tp*gp*cp*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'J':
    Compound: DNA (5'-(*cp*cp*gp*cp*ap*ap*cp*cp*ap*cp* ap*gp*ap*gp*tp*tp*tp*gp*gp*ap*ap*ap*tp*cp*tp*t)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1hjbA (A:)
vkskakktvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkve
qlsrelstlrnlfkqlpepllassghc

    Sequence, based on observed residues (ATOM records): (download) 
    >1hjbA (A:)
dkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkveqlsrelstl
rnlfkq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1hjbB (B:)
vkskakktvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkve
qlsrelstlrnlfkqlpepllassghc

    Sequence, based on observed residues (ATOM records): (download) 
    >1hjbB (B:)
dkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkveqlsrelstl
rnlfkql

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1hjbC (C:)
gelvrtdspnflcsvlpthwrcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrn
ataamknqvarfndlrfvgrsgrgksftltitvftnppqvatyhraikitvdgpreprrh
rqk

    Sequence, based on observed residues (ATOM records): (download) 
    >1hjbC (C:)
gelvrtdspnflcsvlpthwrcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrn
ataamknqvarfndlrfvgrsgrgksftltitvftnppqvatyhraikitvdgpreprrh

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1hjbD (D:)
vkskakktvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkve
qlsrelstlrnlfkqlpepllassghc

    Sequence, based on observed residues (ATOM records): (download) 
    >1hjbD (D:)
dkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkveqlsrelstl
rnlfkqlp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1hjbE (E:)
vkskakktvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkve
qlsrelstlrnlfkqlpepllassghc

    Sequence, based on observed residues (ATOM records): (download) 
    >1hjbE (E:)
dkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkveqlsrelstl
rnlfkqlp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1hjbF (F:)
gelvrtdspnflcsvlpthwrcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrn
ataamknqvarfndlrfvgrsgrgksftltitvftnppqvatyhraikitvdgpreprrh
rqk

    Sequence, based on observed residues (ATOM records): (download) 
    >1hjbF (F:)
gelvrtdspnflcsvlpthwrcnktlpiafkvvalgdvpdgtlvtvmagndenysaelrn
ataamknqvarfndlrfvgrsgrgksftltitvftnppqvatyhraikitvdgpreprrh

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.