PDB entry 1hb5

View 1hb5 on RCSB PDB site
Description: quasi-atomic resolution model of bacteriophage PRD1 P3-shell, obtained by combined cryo-EM and X-ray crystallography.
Class: virus
Keywords: virus, virus/viral protein, tectiviridae, bacteriophage prd1, cryo- em, image reconstruction, icosahedral virus
Deposited on 2001-04-11, released 2001-12-05
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-04-18, with a file datestamp of 2012-04-13.
Experiment type: EM
Resolution: 12 Å
R-factor: 0.312
AEROSPACI score: -0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: bacteriophage prd1 p3-shell
    Species: BACTERIOPHAGE PRD1 [TaxId:10658]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1hb5a_
  • Chain 'B':
    Compound: bacteriophage prd1 p3-shell
    Species: BACTERIOPHAGE PRD1 [TaxId:10658]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1hb5b_
  • Chain 'C':
    Compound: bacteriophage prd1 p3-shell
    Species: BACTERIOPHAGE PRD1 [TaxId:10658]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1hb5c_
  • Chain 'D':
    Compound: bacteriophage prd1 p3-shell
    Species: BACTERIOPHAGE PRD1 [TaxId:10658]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1hb5d_
  • Chain 'E':
    Compound: bacteriophage prd1 p3-shell
    Species: BACTERIOPHAGE PRD1 [TaxId:10658]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1hb5e_
  • Chain 'F':
    Compound: bacteriophage prd1 p3-shell
    Species: BACTERIOPHAGE PRD1 [TaxId:10658]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1hb5f_
  • Chain 'G':
    Compound: bacteriophage prd1 p3-shell
    Species: BACTERIOPHAGE PRD1 [TaxId:10658]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1hb5g_
  • Chain 'H':
    Compound: bacteriophage prd1 p3-shell
    Species: BACTERIOPHAGE PRD1 [TaxId:10658]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1hb5h_
  • Chain 'I':
    Compound: bacteriophage prd1 p3-shell
    Species: BACTERIOPHAGE PRD1 [TaxId:10658]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1hb5i_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1hb5A (A:)
aqvqqltpaqqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpan
vgivkgflvkvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvn
takqgapflssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgav
lanvpqskqrlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlp
vgqngyilplidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagt
dinylsqrtanfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfv
vnpktvnqnarllmgyeyftsrtelvnagtistt

    Sequence, based on observed residues (ATOM records): (download) 
    >1hb5A (A:)
lrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpanvgivkgflvkvta
aitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvntakqgapflssmv
tdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgavlanvpqskqrlkl
efannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlpvgqngyilplidl
stlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagtdinylsqrtanfs
dtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfvvnpktvnqnarll
mgyeyftsrt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1hb5B (B:)
aqvqqltpaqqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpan
vgivkgflvkvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvn
takqgapflssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgav
lanvpqskqrlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlp
vgqngyilplidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagt
dinylsqrtanfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfv
vnpktvnqnarllmgyeyftsrtelvnagtistt

    Sequence, based on observed residues (ATOM records): (download) 
    >1hb5B (B:)
qqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpanvgivkgflv
kvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvntakqgapfl
ssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgavlanvpqskq
rlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlpvgqngyilp
lidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagtdinylsqrt
anfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfvvnpktvnqn
arllmgyeyftsrt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1hb5C (C:)
aqvqqltpaqqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpan
vgivkgflvkvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvn
takqgapflssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgav
lanvpqskqrlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlp
vgqngyilplidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagt
dinylsqrtanfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfv
vnpktvnqnarllmgyeyftsrtelvnagtistt

    Sequence, based on observed residues (ATOM records): (download) 
    >1hb5C (C:)
alrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpanvgivkgflvkvt
aaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvntakqgapflssm
vtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgavlanvpqskqrlk
lefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlpvgqngyilplid
lstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagtdinylsqrtanf
sdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfvvnpktvnqnarl
lmgyeyftsrt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1hb5D (D:)
aqvqqltpaqqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpan
vgivkgflvkvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvn
takqgapflssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgav
lanvpqskqrlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlp
vgqngyilplidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagt
dinylsqrtanfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfv
vnpktvnqnarllmgyeyftsrtelvnagtistt

    Sequence, based on observed residues (ATOM records): (download) 
    >1hb5D (D:)
lrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpanvgivkgflvkvta
aitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvntakqgapflssmv
tdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgavlanvpqskqrlkl
efannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlpvgqngyilplidl
stlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagtdinylsqrtanfs
dtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfvvnpktvnqnarll
mgyeyftsrt

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1hb5E (E:)
aqvqqltpaqqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpan
vgivkgflvkvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvn
takqgapflssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgav
lanvpqskqrlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlp
vgqngyilplidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagt
dinylsqrtanfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfv
vnpktvnqnarllmgyeyftsrtelvnagtistt

    Sequence, based on observed residues (ATOM records): (download) 
    >1hb5E (E:)
qqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpanvgivkgflv
kvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvntakqgapfl
ssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgavlanvpqskq
rlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlpvgqngyilp
lidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagtdinylsqrt
anfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfvvnpktvnqn
arllmgyeyftsrt

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1hb5F (F:)
aqvqqltpaqqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpan
vgivkgflvkvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvn
takqgapflssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgav
lanvpqskqrlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlp
vgqngyilplidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagt
dinylsqrtanfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfv
vnpktvnqnarllmgyeyftsrtelvnagtistt

    Sequence, based on observed residues (ATOM records): (download) 
    >1hb5F (F:)
alrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpanvgivkgflvkvt
aaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvntakqgapflssm
vtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgavlanvpqskqrlk
lefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlpvgqngyilplid
lstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagtdinylsqrtanf
sdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfvvnpktvnqnarl
lmgyeyftsrt

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1hb5G (G:)
aqvqqltpaqqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpan
vgivkgflvkvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvn
takqgapflssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgav
lanvpqskqrlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlp
vgqngyilplidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagt
dinylsqrtanfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfv
vnpktvnqnarllmgyeyftsrtelvnagtistt

    Sequence, based on observed residues (ATOM records): (download) 
    >1hb5G (G:)
lrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpanvgivkgflvkvta
aitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvntakqgapflssmv
tdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgavlanvpqskqrlkl
efannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlpvgqngyilplidl
stlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagtdinylsqrtanfs
dtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfvvnpktvnqnarll
mgyeyftsrt

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1hb5H (H:)
aqvqqltpaqqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpan
vgivkgflvkvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvn
takqgapflssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgav
lanvpqskqrlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlp
vgqngyilplidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagt
dinylsqrtanfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfv
vnpktvnqnarllmgyeyftsrtelvnagtistt

    Sequence, based on observed residues (ATOM records): (download) 
    >1hb5H (H:)
qqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpanvgivkgflv
kvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvntakqgapfl
ssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgavlanvpqskq
rlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlpvgqngyilp
lidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagtdinylsqrt
anfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfvvnpktvnqn
arllmgyeyftsrt

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1hb5I (I:)
aqvqqltpaqqaalrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpan
vgivkgflvkvtaaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvn
takqgapflssmvtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgav
lanvpqskqrlklefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlp
vgqngyilplidlstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagt
dinylsqrtanfsdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfv
vnpktvnqnarllmgyeyftsrtelvnagtistt

    Sequence, based on observed residues (ATOM records): (download) 
    >1hb5I (I:)
alrnqqamaanlqarqivlqqsypviqqvetqtfdpanrsvfdvtpanvgivkgflvkvt
aaitnnhateavaltdfgpanlvqrviyydpdnqrhtetsgwhlhfvntakqgapflssm
vtdspikygdvmnvidapatiaagatgeltmyywvplaysetdltgavlanvpqskqrlk
lefannntafaavganpleaiyqgagaadcefeeisytvyqsyldqlpvgqngyilplid
lstlynlensaqagltpnvdfvvqyanlyrylstiavfdnggsfnagtdinylsqrtanf
sdtrkldpktwaaqtrrriatdfpkgvyycdnrdkpiytlqygnvgfvvnpktvnqnarl
lmgyeyftsrt