PDB entry 1h88

View 1h88 on RCSB PDB site
Description: crystal structure of ternary protein-DNA complex1
Class: transcription/DNA
Keywords: transcription-DNA complex, transcription regulation, bzip, proto-oncogene, myb, c-myb, c/ebp
Deposited on 2001-01-29, released 2002-01-28
The last revision prior to the SCOPe 2.03 freeze date was dated 2013-03-06, with a file datestamp of 2013-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.222
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ccaat/enhancer binding protein beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1h88a_
  • Chain 'B':
    Compound: ccaat/enhancer binding protein beta
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1h88b_
  • Chain 'C':
    Compound: Myb proto-oncogene protein
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1h88c1, d1h88c2, d1h88c3
  • Chain 'D':
    Compound: DNA(5'-(*gp*ap*tp*gp*tp*gp*gp*cp*gp*cp*ap* ap*tp*cp*cp*tp*tp*ap*ap*cp*gp*gp*ap*cp*tp*g)-3')
  • Chain 'E':
    Compound: DNA(5'-(*cp*cp*ap*gp*tp*cp*cp*gp*tp*tp*ap* ap*gp*gp*ap*tp*tp*gp*cp*gp*cp*cp*ap*cp*ap*t)-3')
  • Heterogens: NH4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1h88A (A:)
vkskakktvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkve
qlsrelstlrnlfkqlpe

    Sequence, based on observed residues (ATOM records): (download) 
    >1h88A (A:)
vdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkveqlsrelst
lrnlfkqlpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1h88B (B:)
vkskakktvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkve
qlsrelstlrnlfkqlpe

    Sequence, based on observed residues (ATOM records): (download) 
    >1h88B (B:)
tvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkveqlsrels
tlrnlfkqlpe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1h88C (C:)
mghlgktrwtreedeklkklveqngtddwkvianylpnrtdvqcqhrwqkvlnpelikgp
wtkeedqrviklvqkygpkrwsviakhlkgrigkqcrerwhnhlnpevkktswteeedri
iyqahkrlgnrwaeiakllpgrtdnaiknhwnstmrrkv

    Sequence, based on observed residues (ATOM records): (download) 
    >1h88C (C:)
gktrwtreedeklkklveqngtddwkvianylpnrtdvqcqhrwqkvlnpelikgpwtke
edqrviklvqkygpkrwsviakhlkgrigkqcrerwhnhlnpevkktswteeedriiyqa
hkrlgnrwaeiakllpgrtdnaiknhwnstmr

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.