PDB entry 1h88

View 1h88 on RCSB PDB site
Description: crystal structure of ternary protein-DNA complex1
Class: transcription/DNA
Keywords: transcription/DNA, protein-DNA complex, transcription regulation, bzip, proto-oncogene, myb, c-myb, c/ebp, crystal structure
Deposited on 2001-01-29, released 2002-01-28
The last revision prior to the SCOP 1.73 freeze date was dated 2002-01-28, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.222
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: caat/enhancer binding protein beta
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1h88a_
  • Chain 'B':
    Compound: caat/enhancer binding protein beta
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1h88b_
  • Chain 'C':
    Compound: Myb proto-oncogene protein
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1h88c1, d1h88c2, d1h88c3
  • Chain 'D':
    Compound: 5'-d(*gp*ap*tp*gp*tp*gp*gp*cp*gp*cp*ap* ap*tp*cp*cp*tp*tp*ap*ap*cp*gp*gp*ap*cp*tp*g)-3'
    Species: synthetic, synthetic
  • Chain 'E':
    Compound: 5'-d(*cp*cp*ap*gp*tp*cp*cp*gp*tp*tp*ap* ap*gp*gp*ap*tp*tp*gp*cp*gp*cp*cp*ap*cp*ap*t)-3'
    Species: synthetic, synthetic
  • Heterogens: NH4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1h88A (A:)
vkskakktvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkve
qlsrelstlrnlfkqlpe

    Sequence, based on observed residues (ATOM records): (download) 
    >1h88A (A:)
vdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkveqlsrelst
lrnlfkqlpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1h88B (B:)
vkskakktvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkve
qlsrelstlrnlfkqlpe

    Sequence, based on observed residues (ATOM records): (download) 
    >1h88B (B:)
tvdkhsdeykirrernniavrksrdkakmrnletqhkvleltaenerlqkkveqlsrels
tlrnlfkqlpe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1h88C (C:)
mghlgktrwtreedeklkklveqngtddwkvianylpnrtdvqcqhrwqkvlnpelikgp
wtkeedqrviklvqkygpkrwsviakhlkgrigkqcrerwhnhlnpevkktswteeedri
iyqahkrlgnrwaeiakllpgrtdnaiknhwnstmrrkv

    Sequence, based on observed residues (ATOM records): (download) 
    >1h88C (C:)
gktrwtreedeklkklveqngtddwkvianylpnrtdvqcqhrwqkvlnpelikgpwtke
edqrviklvqkygpkrwsviakhlkgrigkqcrerwhnhlnpevkktswteeedriiyqa
hkrlgnrwaeiakllpgrtdnaiknhwnstmr

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.