PDB entry 1h38

View 1h38 on RCSB PDB site
Description: structure of a T7 RNA polymerase elongation complex at 2.9a resolution
Class: transferase
Keywords: transferase, RNA polymerase, T7 RNA polymerase, elongation complex, protein/DNA/RNA, riken structural genomics/proteomics initiative, rsgi, structural genomics
Deposited on 2002-08-24, released 2002-11-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.236
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase
    Species: BACTERIOPHAGE T7 [TaxId:10760]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1h38a_
  • Chain 'B':
    Compound: DNA-directed RNA polymerase
    Species: BACTERIOPHAGE T7 [TaxId:10760]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1h38b_
  • Chain 'C':
    Compound: DNA-directed RNA polymerase
    Species: BACTERIOPHAGE T7 [TaxId:10760]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1h38c_
  • Chain 'D':
    Compound: DNA-directed RNA polymerase
    Species: BACTERIOPHAGE T7 [TaxId:10760]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1h38d_
  • Chain 'E':
    Compound: 5'-d(*gp*gp*gp*ap*ap*tp*cp*gp*ap*cp *ap*tp*cp*gp*cp*cp*gp*c)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'F':
    Compound: 5'-r(*ap*ap*cp*up*gp*cp*gp*gp*cp*gp *ap*u)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'G':
    Compound: 5'-d(*gp*tp*cp*gp*ap*tp*tp*cp*cp*cp)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'H':
    Compound: 5'-d(*gp*gp*gp*ap*ap*tp*cp*gp*ap*cp *ap*tp*cp*gp*cp*cp*gp*c)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'I':
    Compound: 5'-r(*ap*ap*cp*up*gp*cp*gp*gp*cp*gp *ap*u)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'J':
    Compound: 5'-d(*gp*tp*cp*gp*ap*tp*tp*cp*cp*cp)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'K':
    Compound: 5'-d(*gp*gp*gp*ap*ap*tp*cp*gp*ap*cp *ap*tp*cp*gp*cp*cp*gp*c)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'L':
    Compound: 5'-r(*ap*ap*cp*up*gp*cp*gp*gp*cp*gp *ap*u)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'M':
    Compound: 5'-d(*gp*tp*cp*gp*ap*tp*tp*cp*cp*cp)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'N':
    Compound: 5'-d(*gp*gp*gp*ap*ap*tp*cp*gp*ap*cp *ap*tp*cp*gp*cp*cp*gp*c)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'O':
    Compound: 5'-r(*ap*ap*cp*up*gp*cp*gp*gp*cp*gp *ap*u)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Chain 'P':
    Compound: 5'-d(*gp*tp*cp*gp*ap*tp*tp*cp*cp*cp)-3'
    Species: BACTERIOPHAGE T7, synthetic [TaxId:10760]
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1h38A (A:)
mntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlk
agevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitik
ttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykk
afmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqd
setielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrth
skkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereel
pmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynm
dwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperik
fieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgsc
sgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtde
ntgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaid
sgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilr
krcavhwvtpdgfpvwqeykkpiqtrlnlmflgqfrlqptintnkdseidahkqesgiap
nfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescd
vladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa

    Sequence, based on observed residues (ATOM records): (download) 
    >1h38A (A:)
ntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlka
gevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitikt
tlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykka
fmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqds
etielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrths
kkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiealtaw
kraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgn
dmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacakspl
entwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggr
avnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkala
gqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagym
akliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwq
eykkpiqtrlnlmflgqfrdseidahkqesgiapnfvhsqdgshlrktvvwahekygies
falihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpa
kgnlnlrdilesdfafa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1h38B (B:)
mntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlk
agevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitik
ttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykk
afmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqd
setielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrth
skkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereel
pmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynm
dwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperik
fieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgsc
sgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtde
ntgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaid
sgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilr
krcavhwvtpdgfpvwqeykkpiqtrlnlmflgqfrlqptintnkdseidahkqesgiap
nfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescd
vladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa

    Sequence, based on observed residues (ATOM records): (download) 
    >1h38B (B:)
ntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlka
gevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitikt
tlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykka
fmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqds
etielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrths
kkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiealtaw
kraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgn
dmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacakspl
entwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggr
avnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkala
gqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagym
akliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwq
eykkpiqtrlnlmflgqfrdseidahkqesgiapnfvhsqdgshlrktvvwahekygies
falihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpa
kgnlnlrdilesdfafa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1h38C (C:)
mntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlk
agevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitik
ttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykk
afmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqd
setielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrth
skkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereel
pmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynm
dwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperik
fieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgsc
sgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtde
ntgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaid
sgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilr
krcavhwvtpdgfpvwqeykkpiqtrlnlmflgqfrlqptintnkdseidahkqesgiap
nfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescd
vladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa

    Sequence, based on observed residues (ATOM records): (download) 
    >1h38C (C:)
ntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlka
gevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitikt
tlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykka
fmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqds
etielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrths
kkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiealtaw
kraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgn
dmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacakspl
entwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggr
avnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkala
gqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagym
akliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwq
eykkpiqtrlnlmflgqfrdseidahkqesgiapnfvhsqdgshlrktvvwahekygies
falihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpa
kgnlnlrdilesdfafa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1h38D (D:)
mntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlk
agevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitik
ttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykk
afmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqd
setielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrth
skkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereel
pmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynm
dwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperik
fieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgsc
sgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtde
ntgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaid
sgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilr
krcavhwvtpdgfpvwqeykkpiqtrlnlmflgqfrlqptintnkdseidahkqesgiap
nfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescd
vladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa

    Sequence, based on observed residues (ATOM records): (download) 
    >1h38D (D:)
ntiniakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmferqlka
gevadnaaakplittllpkmiarindwfeevkakrgkrptafqflqeikpeavayitikt
tlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykka
fmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhrqnagvvgqds
etielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrths
kkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiealtaw
kraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgn
dmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacakspl
entwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggr
avnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkala
gqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagym
akliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwq
eykkpiqtrlnlmflgqfrdseidahkqesgiapnfvhsqdgshlrktvvwahekygies
falihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpa
kgnlnlrdilesdfafa

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.