PDB entry 1h0m

View 1h0m on RCSB PDB site
Description: Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNA
Class: transcription/DNA
Keywords: TRANSCRIPTION/DNA, LUXR-TYPE PROTEIN, QUORUM SENSING, TRANSCRIPTIONAL REGULATOR, DNA-BINDING PROTEIN, HOMOSERINE LACTONE, TRAR, TRANSCRIPTION-DNA complex
Deposited on 2002-06-25, released 2002-08-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-12-16, with a file datestamp of 2020-12-11.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: transcriptional activator protein trar
    Species: Rhizobium radiobacter [TaxId:358]
    Gene: traR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1h0ma1, d1h0ma2
  • Chain 'B':
    Compound: transcriptional activator protein trar
    Species: Rhizobium radiobacter [TaxId:358]
    Gene: traR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1h0mb1, d1h0mb2
  • Chain 'C':
    Compound: transcriptional activator protein trar
    Species: Rhizobium radiobacter [TaxId:358]
    Gene: traR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1h0mc1, d1h0mc2
  • Chain 'D':
    Compound: transcriptional activator protein trar
    Species: Rhizobium radiobacter [TaxId:358]
    Gene: traR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1h0md1, d1h0md2
  • Chain 'E':
    Compound: 5'-d(*ap*tp*gp*tp*gp*cp*ap*gp*ap*tp *cp*tp*gp*cp*ap*cp*ap*t)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: 5'-d(*ap*tp*gp*tp*gp*cp*ap*gp*ap*tp *cp*tp*gp*cp*ap*cp*ap*t)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: 5'-d(*ap*tp*gp*tp*gp*cp*ap*gp*ap*tp *cp*tp*gp*cp*ap*cp*ap*t)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: 5'-d(*ap*tp*gp*tp*gp*cp*ap*gp*ap*tp *cp*tp*gp*cp*ap*cp*ap*t)-3'
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: LAE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1h0mA (A:)
    mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
    yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
    angfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeat
    ylrwiavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
    

    Sequence, based on observed residues (ATOM records): (download)
    >1h0mA (A:)
    mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
    yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
    angfmsmftmasdkpvidldreidavaaaatigqiharisflrttdaawldpkeatylrw
    iavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1h0mB (B:)
    mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
    yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
    angfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeat
    ylrwiavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
    

    Sequence, based on observed residues (ATOM records): (download)
    >1h0mB (B:)
    mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
    yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
    angfmsmftmasdkpvididavaaaatigqiharisflrttptaedaawldpkeatylrw
    iavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1h0mC (C:)
    mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
    yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
    angfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeat
    ylrwiavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
    

    Sequence, based on observed residues (ATOM records): (download)
    >1h0mC (C:)
    mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
    yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
    angfmsmftmasdkpvidldreidavaaaatigqiharisflrtaawldpkeatylrwia
    vgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1h0mD (D:)
    mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
    yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
    angfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeat
    ylrwiavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
    

    Sequence, based on observed residues (ATOM records): (download)
    >1h0mD (D:)
    qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqsty
    fdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikta
    ngfmsmftmasdkpvididavaaaatigqiharisflrttptaedaawldpkeatylrwi
    avgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.