PDB entry 1h0m
View 1h0m on RCSB PDB site
Description: Three-dimensional structure of the quorum sensing protein TraR bound to its autoinducer and to its target DNA
Class: transcription/DNA
Keywords: TRANSCRIPTION/DNA, LUXR-TYPE PROTEIN, QUORUM SENSING, TRANSCRIPTIONAL REGULATOR, DNA-BINDING PROTEIN, HOMOSERINE LACTONE, TRAR, TRANSCRIPTION-DNA complex
Deposited on
2002-06-25, released
2002-08-29
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-12-16, with a file datestamp of
2020-12-11.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: transcriptional activator protein trar
Species: Rhizobium radiobacter [TaxId:358]
Gene: traR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1h0ma1, d1h0ma2 - Chain 'B':
Compound: transcriptional activator protein trar
Species: Rhizobium radiobacter [TaxId:358]
Gene: traR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1h0mb1, d1h0mb2 - Chain 'C':
Compound: transcriptional activator protein trar
Species: Rhizobium radiobacter [TaxId:358]
Gene: traR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1h0mc1, d1h0mc2 - Chain 'D':
Compound: transcriptional activator protein trar
Species: Rhizobium radiobacter [TaxId:358]
Gene: traR
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1h0md1, d1h0md2 - Chain 'E':
Compound: 5'-d(*ap*tp*gp*tp*gp*cp*ap*gp*ap*tp *cp*tp*gp*cp*ap*cp*ap*t)-3'
Species: synthetic construct, synthetic [TaxId:32630]
- Chain 'F':
Compound: 5'-d(*ap*tp*gp*tp*gp*cp*ap*gp*ap*tp *cp*tp*gp*cp*ap*cp*ap*t)-3'
Species: synthetic construct, synthetic [TaxId:32630]
- Chain 'G':
Compound: 5'-d(*ap*tp*gp*tp*gp*cp*ap*gp*ap*tp *cp*tp*gp*cp*ap*cp*ap*t)-3'
Species: synthetic construct, synthetic [TaxId:32630]
- Chain 'H':
Compound: 5'-d(*ap*tp*gp*tp*gp*cp*ap*gp*ap*tp *cp*tp*gp*cp*ap*cp*ap*t)-3'
Species: synthetic construct, synthetic [TaxId:32630]
- Heterogens: LAE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1h0mA (A:)
mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
angfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeat
ylrwiavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
Sequence, based on observed residues (ATOM records): (download)
>1h0mA (A:)
mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
angfmsmftmasdkpvidldreidavaaaatigqiharisflrttdaawldpkeatylrw
iavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1h0mB (B:)
mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
angfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeat
ylrwiavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
Sequence, based on observed residues (ATOM records): (download)
>1h0mB (B:)
mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
angfmsmftmasdkpvididavaaaatigqiharisflrttptaedaawldpkeatylrw
iavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1h0mC (C:)
mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
angfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeat
ylrwiavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
Sequence, based on observed residues (ATOM records): (download)
>1h0mC (C:)
mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
angfmsmftmasdkpvidldreidavaaaatigqiharisflrtaawldpkeatylrwia
vgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1h0mD (D:)
mqhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqst
yfdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikt
angfmsmftmasdkpvidldreidavaaaatigqiharisflrttptaedaawldpkeat
ylrwiavgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
Sequence, based on observed residues (ATOM records): (download)
>1h0mD (D:)
qhwldkltdlaaiegdecilktgladiadhfgftgyaylhiqhrhitavtnyhrqwqsty
fdkkfealdpvvkrarsrkhiftwsgeherptlskderafydhasdfgirsgitipikta
ngfmsmftmasdkpvididavaaaatigqiharisflrttptaedaawldpkeatylrwi
avgktmeeiadvegvkynsvrvklreamkrfdvrskahltalairrkli
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.