PDB entry 1gy8

View 1gy8 on RCSB PDB site
Description: trypanosoma brucei udp-galactose 4' epimerase
Class: oxidoreductase
Keywords: epimerase, galactose, trypanosoma brucei, oxidoreductase
Deposited on 2002-04-21, released 2003-05-22
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.216
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: udp-galactose 4-epimerase
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GY8 (0-1)
    • Uniprot Q8T8E9 (2-End)
    Domains in SCOPe 2.05: d1gy8a_
  • Chain 'B':
    Compound: udp-galactose 4-epimerase
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GY8 (0-1)
    • Uniprot Q8T8E9 (2-End)
    Domains in SCOPe 2.05: d1gy8b_
  • Chain 'C':
    Compound: udp-galactose 4-epimerase
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GY8 (0-1)
    • Uniprot Q8T8E9 (2-End)
    Domains in SCOPe 2.05: d1gy8c_
  • Chain 'D':
    Compound: udp-galactose 4-epimerase
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GY8 (0-1)
    • Uniprot Q8T8E9 (2-End)
    Domains in SCOPe 2.05: d1gy8d_
  • Heterogens: NAD, UDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1gy8A (A:)
shmrvlvcggagyigshfvrallrdtnhsvvivdslvgthgksdhvetrenvarklqqsd
gpkppwadryaalevgdvrnedflngvftrhgpidavvhmcaflavgesvrdplkyydnn
vvgilrllqamllhkcdkiifsssaaifgnptmgsvstnaepidinakkspespygeskl
iaermirdcaeaygikgiclryfnacgahedgdigehyqgsthlipiilgrvmsdiapdq
rltihedastdkrmpifgtdyptpdgtcvrdyvhvcdlasahilaldyveklgpndksky
fsvfnlgtsrgysvrevievarkttghpipvrecgrregdpaylvaasdkarevlgwkpk
ydtleaimetswkfqrthpngyasqengtpggrttkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1gy8A (A:)
shmrvlvcggagyigshfvrallrdtnhsvvivdslvgthgksdhvetrenvarklqqsd
gpkppwadryaalevgdvrnedflngvftrhgpidavvhmcaflavgesvrdplkyydnn
vvgilrllqamllhkcdkiifsssaaifgnptmnaepidinakkspespygeskliaerm
irdcaeaygikgiclryfnacgahedgdigehyqgsthlipiilgrvmsdiapddkrmpi
fgtdyptpdgtcvrdyvhvcdlasahilaldyveklgpndkskyfsvfnlgtsrgysvre
vievarkttghpipvrecgrregdpaylvaasdkarevlgwkpkydtleaimetswkfqr
thpngya

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1gy8B (B:)
shmrvlvcggagyigshfvrallrdtnhsvvivdslvgthgksdhvetrenvarklqqsd
gpkppwadryaalevgdvrnedflngvftrhgpidavvhmcaflavgesvrdplkyydnn
vvgilrllqamllhkcdkiifsssaaifgnptmgsvstnaepidinakkspespygeskl
iaermirdcaeaygikgiclryfnacgahedgdigehyqgsthlipiilgrvmsdiapdq
rltihedastdkrmpifgtdyptpdgtcvrdyvhvcdlasahilaldyveklgpndksky
fsvfnlgtsrgysvrevievarkttghpipvrecgrregdpaylvaasdkarevlgwkpk
ydtleaimetswkfqrthpngyasqengtpggrttkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1gy8B (B:)
shmrvlvcggagyigshfvrallrdtnhsvvivdslvgthgksdhvetrenvarklqqsd
gpkppwadryaalevgdvrnedflngvftrhgpidavvhmcaflavgesvrdplkyydnn
vvgilrllqamllhkcdkiifsssaaifgnptmtnaepidinakkspespygeskliaer
mirdcaeaygikgiclryfnacgahedgdigehyqgsthlipiilgrvmsdiadkrmpif
gtdyptpdgtcvrdyvhvcdlasahilaldyveklgpndkskyfsvfnlgtsrgysvrev
ievarkttghpipvrecgrregdpaylvaasdkarevlgwkpkydtleaimetswkfqrt
hpngya

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1gy8C (C:)
shmrvlvcggagyigshfvrallrdtnhsvvivdslvgthgksdhvetrenvarklqqsd
gpkppwadryaalevgdvrnedflngvftrhgpidavvhmcaflavgesvrdplkyydnn
vvgilrllqamllhkcdkiifsssaaifgnptmgsvstnaepidinakkspespygeskl
iaermirdcaeaygikgiclryfnacgahedgdigehyqgsthlipiilgrvmsdiapdq
rltihedastdkrmpifgtdyptpdgtcvrdyvhvcdlasahilaldyveklgpndksky
fsvfnlgtsrgysvrevievarkttghpipvrecgrregdpaylvaasdkarevlgwkpk
ydtleaimetswkfqrthpngyasqengtpggrttkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1gy8C (C:)
shmrvlvcggagyigshfvrallrdtnhsvvivdslvgthgksdhvetrenvarklqqsd
gpkppwadryaalevgdvrnedflngvftrhgpidavvhmcaflavgesvrdplkyydnn
vvgilrllqamllhkcdkiifsssaaifgnptmnaepidinakkspespygeskliaerm
irdcaeaygikgiclryfnacgahedgdigehyqgsthlipiilgrvmsdiapdastdkr
mpifgtdyptpdgtcvrdyvhvcdlasahilaldyveklgpndkskyfsvfnlgtsrgys
vrevievarkttghpipvrecgrregdpaylvaasdkarevlgwkpkydtleaimetswk
fqrthpngya

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1gy8D (D:)
shmrvlvcggagyigshfvrallrdtnhsvvivdslvgthgksdhvetrenvarklqqsd
gpkppwadryaalevgdvrnedflngvftrhgpidavvhmcaflavgesvrdplkyydnn
vvgilrllqamllhkcdkiifsssaaifgnptmgsvstnaepidinakkspespygeskl
iaermirdcaeaygikgiclryfnacgahedgdigehyqgsthlipiilgrvmsdiapdq
rltihedastdkrmpifgtdyptpdgtcvrdyvhvcdlasahilaldyveklgpndksky
fsvfnlgtsrgysvrevievarkttghpipvrecgrregdpaylvaasdkarevlgwkpk
ydtleaimetswkfqrthpngyasqengtpggrttkl

    Sequence, based on observed residues (ATOM records): (download) 
    >1gy8D (D:)
shmrvlvcggagyigshfvrallrdtnhsvvivdslvgthgksdhvetrenvarklqqsd
gpkppwadryaalevgdvrnedflngvftrhgpidavvhmcaflavgesvrdplkyydnn
vvgilrllqamllhkcdkiifsssaaifgnptnaepidinakkspespygeskliaermi
rdcaeaygikgiclryfnacgahedgdigehyqgsthlipiilgrvmsdiadkrmpifgt
dyptpdgtcvrdyvhvcdlasahilaldyveklgpndkskyfsvfnlgtsrgysvrevie
varkttghpipvrecgrregdpaylvaasdkarevlgwkpkydtleaimetswkfqrthp
ngya