PDB entry 1gmy

View 1gmy on RCSB PDB site
Description: cathepsin b complexed with dipeptidyl nitrile inhibitor
Class: complex (hydrolase/inhibitor)
Keywords: covalent complex, protease, cathepsin b, hydrolase, thiol protease
Deposited on 2001-09-25, released 2002-09-19
The last revision prior to the SCOP 1.75 freeze date was dated 2002-09-19, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.161
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cathepsin b
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1gmya_
  • Chain 'B':
    Compound: cathepsin b
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1gmyb_
  • Chain 'C':
    Compound: cathepsin b
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1gmyc_
  • Heterogens: APD, AEM, DFA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1gmyA (A:)
klpasfdareqwpqcptikeirdqgscgscwafgaveaisdricihtnahvsvevsaedl
ltccgsmcgdgcnggypaeawnfwtrkglvsgglyeshvgcrpysippcehhvngsrppc
tgegdtpkcskicepgysptykqdkhygynsysvsnsekdimaeiykngpvegafsvysd
fllyksgvyqhvtgemmgghairilgwgvengtpywlvanswntdwgdngffkilrgqdh
cgiesevvagiprtdqyweki

    Sequence, based on observed residues (ATOM records): (download) 
    >1gmyA (A:)
klpasfdareqwpqcptikeirdqgscgscwafgaveaisdricihtnahvsvevsaedl
ltccgsmcgdgcnggypaeawnfwtrkglvsgglyeshvgcrpysippcehhvngsrppc
tgegdtpkcskicepgysptykqdkhygynsysvsnsekdimaeiykngpvegafsvysd
fllyksgvyqhvtgemmgghairilgwgvengtpywlvanswntdwgdngffkilrgqdh
cgiesevvagiprt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1gmyB (B:)
klpasfdareqwpqcptikeirdqgscgscwafgaveaisdricihtnahvsvevsaedl
ltccgsmcgdgcnggypaeawnfwtrkglvsgglyeshvgcrpysippcehhvngsrppc
tgegdtpkcskicepgysptykqdkhygynsysvsnsekdimaeiykngpvegafsvysd
fllyksgvyqhvtgemmgghairilgwgvengtpywlvanswntdwgdngffkilrgqdh
cgiesevvagiprtdqyweki

    Sequence, based on observed residues (ATOM records): (download) 
    >1gmyB (B:)
klpasfdareqwpqcptikeirdqgscgscwafgaveaisdricihtnahvsvevsaedl
ltccgsmcgdgcnggypaeawnfwtrkglvsgglyeshvgcrpysippcehhvngsrppc
tgegdtpkcskicepgysptykqdkhygynsysvsnsekdimaeiykngpvegafsvysd
fllyksgvyqhvtgemmgghairilgwgvengtpywlvanswntdwgdngffkilrgqdh
cgiesevvagipr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1gmyC (C:)
klpasfdareqwpqcptikeirdqgscgscwafgaveaisdricihtnahvsvevsaedl
ltccgsmcgdgcnggypaeawnfwtrkglvsgglyeshvgcrpysippcehhvngsrppc
tgegdtpkcskicepgysptykqdkhygynsysvsnsekdimaeiykngpvegafsvysd
fllyksgvyqhvtgemmgghairilgwgvengtpywlvanswntdwgdngffkilrgqdh
cgiesevvagiprtdqyweki

    Sequence, based on observed residues (ATOM records): (download) 
    >1gmyC (C:)
klpasfdareqwpqcptikeirdqgscgscwafgaveaisdricihtnahvsvevsaedl
ltccgsmcgdgcnggypaeawnfwtrkglvsgglyeshvgcrpysippcehhvngsrppc
tgegdtpkcskicepgysptykqdkhygynsysvsnsekdimaeiykngpvegafsvysd
fllyksgvyqhvtgemmgghairilgwgvengtpywlvanswntdwgdngffkilrgqdh
cgiesevvagipr