PDB entry 1gkp

View 1gkp on RCSB PDB site
Description: D-Hydantoinase (Dihydropyrimidinase) from Thermus sp. in space group C2221
Class: hydrolase
Keywords: hydrolase, hydantoinase, dihydropyrimidinase, cyclic amidase
Deposited on 2001-08-20, released 2002-06-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 1.3 Å
R-factor: N/A
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hydantoinase
    Species: THERMUS SP. [TaxId:275]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GKP (0-457)
      • modified residue (148)
    Domains in SCOPe 2.08: d1gkpa1, d1gkpa2
  • Chain 'B':
    Compound: hydantoinase
    Species: THERMUS SP. [TaxId:275]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GKP (0-457)
      • modified residue (148)
    Domains in SCOPe 2.08: d1gkpb1, d1gkpb2
  • Chain 'C':
    Compound: hydantoinase
    Species: THERMUS SP. [TaxId:275]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GKP (0-457)
      • modified residue (148)
    Domains in SCOPe 2.08: d1gkpc1, d1gkpc2
  • Chain 'D':
    Compound: hydantoinase
    Species: THERMUS SP. [TaxId:275]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GKP (0-457)
      • modified residue (148)
    Domains in SCOPe 2.08: d1gkpd1, d1gkpd2
  • Chain 'E':
    Compound: hydantoinase
    Species: THERMUS SP. [TaxId:275]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GKP (0-457)
      • modified residue (148)
    Domains in SCOPe 2.08: d1gkpe1, d1gkpe2
  • Chain 'F':
    Compound: hydantoinase
    Species: THERMUS SP. [TaxId:275]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GKP (0-457)
      • modified residue (148)
    Domains in SCOPe 2.08: d1gkpf1, d1gkpf2
  • Heterogens: ZN, SO4, EPE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gkpA (A:)
pllikngeiitadsrykadiyaegetitrigqnleappgtevidatgkyvfpgfidphvh
iylpfmatfakdthetgskaalmggtttyiemccpsrnddalegyqlwkskaegnsycdy
tfhmavskfdektegqlreivadgissfkiflsyknffgvddgemyqtlrlakelgvivt
ahcenaelvgrlqqkllsegktgpewhepsrpeaveaegtarfatflettgatgyvvhls
ckpaldaamaakargvpiyiesviphflldktyaerggveamkyimspplrdkrnqkvlw
dalaqgfidtvgtdhcpfdteqkllgkeaftaipngipaiedrvnllytygvsrgrldih
rfvdaastkaaklfglfprkgtiavgsdadlvvydpqyrgtisvktqhvnndyngfegfe
idgrpsvvtvrgkvavrdgqfvgekgwgkllrrepmyf

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gkpB (B:)
pllikngeiitadsrykadiyaegetitrigqnleappgtevidatgkyvfpgfidphvh
iylpfmatfakdthetgskaalmggtttyiemccpsrnddalegyqlwkskaegnsycdy
tfhmavskfdektegqlreivadgissfkiflsyknffgvddgemyqtlrlakelgvivt
ahcenaelvgrlqqkllsegktgpewhepsrpeaveaegtarfatflettgatgyvvhls
ckpaldaamaakargvpiyiesviphflldktyaerggveamkyimspplrdkrnqkvlw
dalaqgfidtvgtdhcpfdteqkllgkeaftaipngipaiedrvnllytygvsrgrldih
rfvdaastkaaklfglfprkgtiavgsdadlvvydpqyrgtisvktqhvnndyngfegfe
idgrpsvvtvrgkvavrdgqfvgekgwgkllrrepmyf

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gkpC (C:)
pllikngeiitadsrykadiyaegetitrigqnleappgtevidatgkyvfpgfidphvh
iylpfmatfakdthetgskaalmggtttyiemccpsrnddalegyqlwkskaegnsycdy
tfhmavskfdektegqlreivadgissfkiflsyknffgvddgemyqtlrlakelgvivt
ahcenaelvgrlqqkllsegktgpewhepsrpeaveaegtarfatflettgatgyvvhls
ckpaldaamaakargvpiyiesviphflldktyaerggveamkyimspplrdkrnqkvlw
dalaqgfidtvgtdhcpfdteqkllgkeaftaipngipaiedrvnllytygvsrgrldih
rfvdaastkaaklfglfprkgtiavgsdadlvvydpqyrgtisvktqhvnndyngfegfe
idgrpsvvtvrgkvavrdgqfvgekgwgkllrrepmyf

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gkpD (D:)
pllikngeiitadsrykadiyaegetitrigqnleappgtevidatgkyvfpgfidphvh
iylpfmatfakdthetgskaalmggtttyiemccpsrnddalegyqlwkskaegnsycdy
tfhmavskfdektegqlreivadgissfkiflsyknffgvddgemyqtlrlakelgvivt
ahcenaelvgrlqqkllsegktgpewhepsrpeaveaegtarfatflettgatgyvvhls
ckpaldaamaakargvpiyiesviphflldktyaerggveamkyimspplrdkrnqkvlw
dalaqgfidtvgtdhcpfdteqkllgkeaftaipngipaiedrvnllytygvsrgrldih
rfvdaastkaaklfglfprkgtiavgsdadlvvydpqyrgtisvktqhvnndyngfegfe
idgrpsvvtvrgkvavrdgqfvgekgwgkllrrepmyf

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gkpE (E:)
pllikngeiitadsrykadiyaegetitrigqnleappgtevidatgkyvfpgfidphvh
iylpfmatfakdthetgskaalmggtttyiemccpsrnddalegyqlwkskaegnsycdy
tfhmavskfdektegqlreivadgissfkiflsyknffgvddgemyqtlrlakelgvivt
ahcenaelvgrlqqkllsegktgpewhepsrpeaveaegtarfatflettgatgyvvhls
ckpaldaamaakargvpiyiesviphflldktyaerggveamkyimspplrdkrnqkvlw
dalaqgfidtvgtdhcpfdteqkllgkeaftaipngipaiedrvnllytygvsrgrldih
rfvdaastkaaklfglfprkgtiavgsdadlvvydpqyrgtisvktqhvnndyngfegfe
idgrpsvvtvrgkvavrdgqfvgekgwgkllrrepmyf

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gkpF (F:)
pllikngeiitadsrykadiyaegetitrigqnleappgtevidatgkyvfpgfidphvh
iylpfmatfakdthetgskaalmggtttyiemccpsrnddalegyqlwkskaegnsycdy
tfhmavskfdektegqlreivadgissfkiflsyknffgvddgemyqtlrlakelgvivt
ahcenaelvgrlqqkllsegktgpewhepsrpeaveaegtarfatflettgatgyvvhls
ckpaldaamaakargvpiyiesviphflldktyaerggveamkyimspplrdkrnqkvlw
dalaqgfidtvgtdhcpfdteqkllgkeaftaipngipaiedrvnllytygvsrgrldih
rfvdaastkaaklfglfprkgtiavgsdadlvvydpqyrgtisvktqhvnndyngfegfe
idgrpsvvtvrgkvavrdgqfvgekgwgkllrrepmyf