PDB entry 1giy

View 1giy on RCSB PDB site
Description: crystal structure of the ribosome at 5.5 a resolution. this file, 1giy, contains the 50s ribosome subunit. the 30s ribosome subunit, three tRNA, and mRNA molecules are in the file 1gix
Class: ribosome
Keywords: ribosome assembly, protein synthesis, life
Deposited on 2001-03-30, released 2001-05-04
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 5.5 Å
R-factor: N/A
AEROSPACI score: 0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 50s 23s ribosomal RNA
    Species: Thermus thermophilus [TaxId:274]
  • Chain 'B':
    Compound: 50s 5s ribosomal RNA
    Species: Thermus thermophilus [TaxId:274]
  • Chain 'C':
    Compound: 50s ribosomal protein l1
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyc_
  • Chain 'D':
    Compound: 50S ribosomal protein L2
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyd_
  • Chain 'E':
    Compound: 50S ribosomal protein L3
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giye_
  • Chain 'F':
    Compound: 50S ribosomal protein L4
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12735 (0-245)
      • conflict (1)
    Domains in SCOPe 2.04: d1giyf_
  • Chain 'G':
    Compound: 50S ribosomal protein L5
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyg_
  • Chain 'H':
    Compound: 50S ribosomal protein L6
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyh_
  • Chain 'I':
    Compound: 50S ribosomal protein L7/L12
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyi_
  • Chain 'J':
    Compound: 50S ribosomal protein L7/L12
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyj_
  • Chain 'K':
    Compound: 50S ribosomal protein L9
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyk_
  • Chain 'L':
    Compound: 50S ribosomal protein L11
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyl_
  • Chain 'M':
    Compound: 50S ribosomal protein L13
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giym_
  • Chain 'N':
    Compound: 50S ribosomal protein L14
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyn_
  • Chain 'O':
    Compound: 50S ribosomal protein L15
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyo_
  • Chain 'P':
    Compound: 50S ribosomal protein L16
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • PDB 1GIY (0-137)
    Domains in SCOPe 2.04: d1giyp_
  • Chain 'Q':
    Compound: 50S ribosomal protein L18
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyq_
  • Chain 'R':
    Compound: 50S ribosomal protein L19
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyr_
  • Chain 'S':
    Compound: 50S ribosomal protein L22
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giys_
  • Chain 'T':
    Compound: 50S ribosomal protein L23
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyt_
  • Chain 'U':
    Compound: 50S ribosomal protein L24
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyu_
  • Chain 'V':
    Compound: 50S ribosomal protein L25
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyv_
  • Chain 'W':
    Compound: 50S ribosomal protein L29
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyw_
  • Chain 'X':
    Compound: 50S ribosomal protein L30
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1giyx_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1giyC (C:)
    pkhgkryrallekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvrg
    tvslphglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdvm
    gavgsklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkasf
    ppekladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyC (C:)
    kryrallekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvrgtvsl
    phglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdvmgavg
    sklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkasfppek
    ladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1giyD (D:)
    qyriidfkrdkdgipgrvatieydpnrsanialinyadgekryiiapknlkvgmeimsgp
    dadikignalplenipvgtlvhnielkpgrggqlvraagtsaqvlgkegkyvivrlasge
    vrmilgkcratvgevgnggrtdkpfvkagnkhhkmkargtkwpnvrgvamnavdhpfg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyD (D:)
    qyriidfkrdkdgipgrvatieydpnrsanialinyadgekryiiapknlkvgmeimsgp
    dadikignalplenipvgtlvhnielkpgrggqlvraagtsaqvlgkegkyvivrlasge
    vrmilgkcratvgevgnggrtdkpfvkagnkhhkmkapnvrgvamnavdhpfg
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1giyE (E:)
    pqpsrprkgslgfgprkrstsetprfnswpsddgqpgvqgfagykagmthvvlvndepns
    pregmeetvpvtvietppmravalrayedtpygqrpltevwtdefhseldrtlsdrldha
    ldivedqirdaheagdlgdlrlithtvpdavpsvpkkkpdvmetrvgggsvsdrldhald
    ivedggehamndifrageyadvagvtkgkgtqgpvkrwgvqkrkgkharqgwrrrignlg
    pwnpsrvrstvpqqgqtgyhqrtelnkrlidigegdeptvdggfvnygevdgpytlvkgs
    vpgpdkrlvpffrpavrpndqprldpevryvsnesnqg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyE (E:)
    vqgfagykagmtpregmetvpvtvietppmravalrayeqrpltevwtdefhseldrtls
    drldhaldivedggehamnifrageyadvagvtkgkgtqgpvkrwgvqkrkgkharqgwr
    rrignlgpwnpsrvrstvpqqgqtgyhqrtelnkrlidigeggpytlvkgsvpgpdkrlv
    pffravrpndq
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >1giyF (F:)
    meatiydldgntdgevdlpdvfetpvrsdligkavraaqanrkqdygsdeyaglrtpaes
    fgsgrgqahvpkldgrarrvpqavkgrsahppktekdrsldlndkerqlavrsalaatad
    adlvadrghefdrdevpvvvsddfedlvktqevvsllealdvhadidradetkikagqgs
    argrkyrrpasilfvtsdepstaarnlagadvatasevntedlapggapgrltvftesal
    aevaer
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyF (F:)
    meatiydntdgevdlpdvfetpvrsdligkavraaqanrkqdygsdeyaglrtpaesfgs
    grgqahrvpqavkgrsahppktekdrsldlndkerqlavrsalaatadvvvsddfedlvk
    tqevvsllealdvhadidrlfvtsdepstaarnlagadvatasevntedlapgrltvfte
    salaevaer
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1giyG (G:)
    ssesesggdfhemrepriekvvvhmgighggrdlanaedilgeitgqmpvrtkakrtvge
    fdiregdpigakvtlrdemaeeflqtalplaelatsqfddtgnfsfgveehtefpsqeyd
    psigiygldvtvnlvrpgyrvakrdkasrsiptkhrlnpadavafiestydvevse
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyG (G:)
    fhemrepriekvvvhmgighanaedilgeitgqmpvrtkakrtvgefdiregdpigakvt
    lrdemaeeflqtalplaelatsqfddtgnfsfgldvtvnlvrpgyrvakrdkasrsiptk
    hr
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >1giyH (H:)
    srvgkkpieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekhh
    ralhgttrsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeegl
    eievpsqtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrlkegktgk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyH (H:)
    pieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekhhralhgt
    trsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeegleievps
    qtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrl
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1giyI (I:)
    mtideiieaiekltvselaelvkkledkfgvtaaapvavaaapvagaaagaaqeektefd
    vvlksfgqnkiqvikvvreitglglkeakdlvekagspdaviksgvskeeaeeikkklee
    agaevelk
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1giyJ (J:)
    mtideiieaiekltvselaelvkkledkfgvtaaapvavaaapvagaaagaaqeektefd
    vvlksfgqnkiqvikvvreitglglkeakdlvekagspdaviksgvskeeaeeikkklee
    agaevelk
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >1giyK (K:)
    mkviflkdvkgkgkkgeiknvadgyannflfkqglaieatpanlkaleaqkqkeqrqaae
    elanakklkeqlekltvtipakageggrlfgsitskqiaeslqaqhglkldkrkielada
    iralgytnvpvklhpevtatlkvhvteqk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyK (K:)
    mkviflkdvkgkgkkgeiknvadgyannflfkqglaieatpanlkaleaqkqkeqrqaae
    elanakklkeqlekltvtipakagegrlfgsitskqiaeslqaqhglkldkrkieladai
    ralgytnvpvklhpevtatlkvhvteqk
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >1giyL (L:)
    makkvaaqiklqlpagkatpappvgpalgqhgvnimefckrfnaetadkagmilpvvitv
    yedksftfiiktppasfllkkaagiekgssepkrkivgkvtrkqieeiaktkmpdlnans
    leaamkiiegtaksmgievvd
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyL (L:)
    qiklqlpagkatpappvgpalgqhgvnimefckrfnaetadkagmilpvvitvyedksft
    fiiktppasfllkkaagiekgssepkrkivgkvtrkqieeiaktkmpdlnansleaamki
    iegtaksmgievv
    

  • Chain 'M':
    Sequence, based on SEQRES records: (download)
    >1giyM (M:)
    msvaefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekr
    vdigndngyfypkrpdgifkrtirgmlphkkqrgreafesvrvylgnpydedgevldgts
    ldrlsnikfvtlgeisetlganktw
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyM (M:)
    aefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekrvdi
    gndngyfypkrpdgifkrtirgmlpkkqrgreafesvrvylgnpydtlgeisetlga
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1giyN (N:)
    miqqesrlkvadnsgarevlvikvlggsgrryanigdvvvatvkdatpggvvkkgqvvka
    vvvrtkrgvrrpdgsyirfdenacviirddksprgtrifgpvarelrdkdfmkiislape
    vi
    

  • Chain 'O':
    Sequence, based on SEQRES records: (download)
    >1giyO (O:)
    tskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqee
    aatidvreidenvtllaaddvaevedggfrvdvrdvveeaddadyvkvlgagqvrheltl
    iaddfsegarekvegaggsveltdlgeerqaeaeetedadadee
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyO (O:)
    fkrpqkvqeeaatidvreidenvtllaaddvaedvrdvaddadyvkvlgagqvrheltli
    addfsegarekvegaggsveltdl
    

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1giyP (P:)
    sikptrreyisgipgkgiaqfkmgnntypaqvenvvekpvqirhnaleaarnaanrfvqn
    sgkfrirkfpfhvireqdgdgmrapfgksvgtaarshganhdfiawvnpdpavefawrra
    ymkvtptvnidsspagna
    

  • Chain 'Q':
    Sequence, based on SEQRES records: (download)
    >1giyQ (Q:)
    atgprykvpmrrrreartdyhqrlrllksgkprlvarksnkhvraqlvtlgpngddtlas
    ahssdlaeygweaptgnmpsayltgllaglraqeagveeavldiglnsptpgskvfaiqe
    gaidagldiphnddvladwqrtrgahiaeydeqleeplysgdfdaadlpehfdelretll
    dgdiel
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyQ (Q:)
    pmrrrreartdyhqrlrllksgkprlvarksnkhvraqlvtpngddtlasahssdlaeyg
    weptgsayltgllaglraqeagveeavldiglnsptpkvfaiqegaidagldi
    

  • Chain 'R':
    Sequence, based on SEQRES records: (download)
    >1giyR (R:)
    prtrecdycgtdiepgtgtmfvhkdgatthfcsskcennadlgrearnlewtdtargeag
    eaedea
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyR (R:)
    recdycgtdiepgtgtmfvhkdgatthfcsskcennadlrearnlewtdtar
    

  • Chain 'S':
    Sequence, based on SEQRES records: (download)
    >1giyS (S:)
    meakaiaryvrisprkvrlvvdlirgksleearnilrytnkrgayfvakvlesaaanavn
    nhdmledrlyvkaayvdegpalkrvlprargradiikkrtshitvilgekhgk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyS (S:)
    meakaiaryvrisprkvrlvvdlirgksleearnilrytnkrgayfvakvlesaaanavn
    nhdmledrlyvkaayvdegpalkrvlprargradiikkrtshitvilgek
    

  • Chain 'T':
    Sequence, based on SEQRES records: (download)
    >1giyT (T:)
    swdvikhphvtekamndmdfqnklqfavddraskgevadaveeqydvtveqvntqntmdg
    ekkavvrlsedddaqevasrigvf
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyT (T:)
    swdvikhphvtekamndmdfnklqfavddraskgevadaveeqydvtveqvntqntmdge
    kkavvrlsedddqeva
    

  • Chain 'U':
    Sequence, based on SEQRES records: (download)
    >1giyU (U:)
    skqpdkqrksqrraplherhkqvratlsadlreeygqrnvrvnagdtvevlrgdfageeg
    evinvdldkavihvedvtlektdgeevprpldtsnvrvtdldledekrearleseddsa
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyU (U:)
    skqpdkqrksqrraplherhkqvratlsadlreeygvrvnagdtvevlrgdfageegevi
    nvdldkavihvedvtlektdgeevprpldtsnvrvtdldledekrearle
    

  • Chain 'V':
    Sequence, based on SEQRES records: (download)
    >1giyV (V:)
    mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
    ltivvdgkeikvkaqdvqrhpykpklqhidfvra
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyV (V:)
    mftinaevrqgkgasrlraankfpaiiygkeaplaieldhdkvmnmqakaefysevltiv
    vdgkeikvkaqdvqrhykpklqhidfvra
    

  • Chain 'W':
    Sequence, based on SEQRES records: (download)
    >1giyW (W:)
    tvlhvqeirdmtpaereaelddlktellnaravqaaggapenpgrikelrkaiariktiq
    geegdlqene
    

    Sequence, based on observed residues (ATOM records): (download)
    >1giyW (W:)
    tvlhvqeirdmtpaereaelddlktellnarvqaaggapenpgrikelrkaiariktiqg
    eegd
    

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1giyX (X:)
    mprlkvklvkspigypkdqkaalkalglrrlqqervledtpairgnvekvahlvrvevve