PDB entry 1ggm

View 1ggm on RCSB PDB site
Description: glycyl-tRNA synthetase from thermus thermophilus complexed with glycyl-adenylate
Class: ligase
Keywords: aminoacyl-tRNA synthase, ligase(synthetase)
Deposited on 1999-01-27, released 1999-01-28
The last revision prior to the SCOP 1.73 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3.4 Å
R-factor: 0.242
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (glycyl-tRNA synthetase)
    Species: Thermus thermophilus
    Gene: GLYS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56206 (95-441)
      • conflict (90)
      • conflict (92)
    Domains in SCOP 1.73: d1ggma1, d1ggma2
  • Chain 'B':
    Compound: protein (glycyl-tRNA synthetase)
    Species: Thermus thermophilus
    Gene: GLYS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P56206 (95-441)
      • conflict (90)
      • conflict (92)
    Domains in SCOP 1.73: d1ggmb1, d1ggmb2
  • Heterogens: GAP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ggmA (A:)
aassldelvalckrrgfifqsseiygglqgvydygplgvelknnlkqawwrrnvyerddm
egldasvlthrlvlhysgheatfadpmvdnakarywtppryfnmmfqdlrgprggrglla
ylrpetaqgifvnfknvldatsrklgfgiaqigkafrneitprnfifrvrefeqmeieyf
vrpgedeywhrywveerlkwwqemglsrenlvpyqqppessahyakatvdilyrfphgsl
elegiaqrtdfdlgshtkdqealgitarvlrnehstqrlayrdpetgkwfvpyviepsag
vdrgvlallaeaftreelpngeerivlklkpqlapikvaviplvknrpeiteyakrlkar
llalglgrvlyedtgnigkayrrhdevgtpfavtvdydtigqskdgttrlkdtvtvrdrd
tmeqirlhvdelegflrerlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ggmB (B:)
aassldelvalckrrgfifqsseiygglqgvydygplgvelknnlkqawwrrnvyerddm
egldasvlthrlvlhysgheatfadpmvdnakarywtppryfnmmfqdlrgprggrglla
ylrpetaqgifvnfknvldatsrklgfgiaqigkafrneitprnfifrvrefeqmeieyf
vrpgedeywhrywveerlkwwqemglsrenlvpyqqppessahyakatvdilyrfphgsl
elegiaqrtdfdlgshtkdqealgitarvlrnehstqrlayrdpetgkwfvpyviepsag
vdrgvlallaeaftreelpngeerivlklkpqlapikvaviplvknrpeiteyakrlkar
llalglgrvlyedtgnigkayrrhdevgtpfavtvdydtigqskdgttrlkdtvtvrdrd
tmeqirlhvdelegflrerlrw