SCOPe 2.02: Structural Classification of Proteins

PDB entry 1ggi

View 1ggi on RCSB PDB site
Description: crystal structure of an hiv-1 neutralizing antibody 50.1 in complex with its v3 loop peptide antigen
Class: immunoglobulin
Keywords: immunoglobulin
Deposited on 1993-04-02, released 1993-10-31
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-08-25, with a file datestamp of 2009-08-21.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.188
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

Chain 'H':
Compound: igg2a 50.1 fab (heavy chain)
Database cross-references and differences (RAF-indexed):
- Uniprot P01863 (115-End)
Domains in SCOPe 2.02: d1ggih1, d1ggih2
Chain 'J':
Compound: igg2a 50.1 fab (heavy chain)
Database cross-references and differences (RAF-indexed):
- Uniprot P01863 (115-End)
Domains in SCOPe 2.02: d1ggij1, d1ggij2
Chain 'L':
Compound: igg2a 50.1 fab (light chain)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- EMBL CAA10344 (2-End)
  - conflict (3)
  - conflict (6)
  - conflict (8)
  - conflict (26)
  - conflict (26)
  - conflict (31)
  - conflict (36)
  - conflict (43)
  - conflict (54)
  - conflict (58)
  - conflict (63)
  - conflict (90)
  - conflict (93)
  - conflict (97)
  - conflict (99)
  - conflict (103)
Domains in SCOPe 2.02: d1ggil1, d1ggil2
Chain 'M':
Compound: igg2a 50.1 fab (light chain)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- EMBL CAA10344 (2-End)
  - conflict (3)
  - conflict (6)
  - conflict (8)
  - conflict (26)
  - conflict (26)
  - conflict (31)
  - conflict (36)
  - conflict (43)
  - conflict (54)
  - conflict (58)
  - conflict (63)
  - conflict (90)
  - conflict (93)
  - conflict (97)
  - conflict (99)
  - conflict (103)
Domains in SCOPe 2.02: d1ggim1, d1ggim2
Chain 'P':
Compound: hiv-1 v3 loop peptide antigen
Database cross-references and differences (RAF-indexed):
- PDB 1GGI (0-End)
Chain 'Q':
Compound: hiv-1 v3 loop peptide antigen
Database cross-references and differences (RAF-indexed):
- PDB 1GGI (0-End)

PDB Chain Sequences:

Chain 'H':
Sequence, based on SEQRES records: (download)

>1ggiH (H:)
qvqlkesgpgilqpsqtlsltcsfsgfslstygmgvswirqpsgkglewlahifwdgdkr
ynpslksrlkiskdtsnnqvflkitsvdtadtatyycvqegyiywgqgtsvtvssaktta
psvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytls
ssvtvtsstwpsqsitcnvahpasstkvdkkieprgptikpc

Sequence, based on observed residues (ATOM records): (download)

>1ggiH (H:)
qvqlkesgpgilqpsqtlsltcsfsgfslstygmgvswirqpsgkglewlahifwdgdkr
ynpslksrlkiskdtsnnqvflkitsvdtadtatyycvqegyiywgqgtsvtvssaktta
psvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytls
ssvtvtsstwpsqsitcnvahpasstkvdkkiepr

Chain 'J':
Sequence, based on SEQRES records: (download)

>1ggiJ (J:)
qvqlkesgpgilqpsqtlsltcsfsgfslstygmgvswirqpsgkglewlahifwdgdkr
ynpslksrlkiskdtsnnqvflkitsvdtadtatyycvqegyiywgqgtsvtvssaktta
psvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytls
ssvtvtsstwpsqsitcnvahpasstkvdkkieprgptikpc

Sequence, based on observed residues (ATOM records): (download)

>1ggiJ (J:)
qvqlkesgpgilqpsqtlsltcsfsgfslstygmgvswirqpsgkglewlahifwdgdkr
ynpslksrlkiskdtsnnqvflkitsvdtadtatyycvqegyiywgqgtsvtvssaktta
psvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytls
ssvtvtsstwpsqsitcnvahpasstkvdkkiepr

Chain 'L':
Sequence, based on SEQRES records: (download)

>1ggiL (L:)
divltqspgslavslgqratiscrasesvdddgnsflhwyqqkpgqppklliyrssnlis
gipdrfsgsgsrtdftltinpveaddvatyycqqsnedpltfgagtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrnec

Sequence, based on observed residues (ATOM records): (download)

>1ggiL (L:)
divltqspgslavslgqratiscrasesvdddgnsflhwyqqkpgqppklliyrssnlis
gipdrfsgsgsrtdftltinpveaddvatyycqqsnedpltfgagtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnr

Chain 'M':
Sequence, based on SEQRES records: (download)

>1ggiM (M:)
divltqspgslavslgqratiscrasesvdddgnsflhwyqqkpgqppklliyrssnlis
gipdrfsgsgsrtdftltinpveaddvatyycqqsnedpltfgagtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrnec

Sequence, based on observed residues (ATOM records): (download)

>1ggiM (M:)
divltqspgslavslgqratiscrasesvdddgnsflhwyqqkpgqppklliyrssnlis
gipdrfsgsgsrtdftltinpveaddvatyycqqsnedpltfgagtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnr

Chain 'P':
No sequence available.
Chain 'Q':
No sequence available.