PDB entry 1gde

View 1gde on RCSB PDB site
Description: crystal structure of pyrococcus protein a-1 e-form
Class: transferase
Keywords: aminotransferase, pyridoxal enzyme, temperature dependence of substrate recognition, TRANSFERASE
Deposited on 2000-09-23, released 2001-09-23
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-16, with a file datestamp of 2019-10-11.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: aspartate aminotransferase
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • GB BAA30477
    Domains in SCOPe 2.08: d1gdea_
  • Chain 'B':
    Compound: aspartate aminotransferase
    Species: Pyrococcus horikoshii [TaxId:53953]
    Database cross-references and differences (RAF-indexed):
    • GB BAA30477 (Start-388)
    Domains in SCOPe 2.08: d1gdeb_
  • Heterogens: GLU, PLP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1gdeA (A:)
malsdrlelvsaseirklfdiaagmkdvislgigepdfdtpqhikeyakealdkglthyg
pnigllelreaiaeklkkqngieadpkteimvllganqaflmglsaflkdgeevliptpa
fvsyapavilaggkpvevptyeedefrlnvdelkkyvtdktraliinspcnptgavltkk
dleeiadfvvehdlivisdevyehfiyddarhysiasldgmfertitvngfsktfamtgw
rlgfvaapswiiermvkfqmynatcpvtfiqyaaakalkderswkaveemrkeydrrrkl
vwkrlnemglptvkpkgafyifprirdtgltskkfselmlkearvavvpgsafgkagegy
vrisyatayekleeamdrmervlkerklv

    Sequence, based on observed residues (ATOM records): (download) 
    >1gdeA (A:)
alsdrlelvsaseirklfdiaagmkdvislgigepdfdtpqhikeyakealdkglthygp
nigllelreaiaeklkkqngieadpkteimvllganqaflmglsaflkdgeevliptpaf
vsyapavilaggkpvevptyeedefrlnvdelkkyvtdktraliinspcnptgavltkkd
leeiadfvvehdlivisdevyehfiyddarhysiasldgmfertitvngfsktfamtgwr
lgfvaapswiiermvkfqmynatcpvtfiqyaaakalkderswkaveemrkeydrrrklv
wkrlnemglptvkpkgafyifprirdtgltskkfselmlkearvavvpgsafgkagegyv
risyatayekleeamdrmervlkerklv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1gdeB (B:)
malsdrlelvsaseirklfdiaagmkdvislgigepdfdtpqhikeyakealdkglthyg
pnigllelreaiaeklkkqngieadpkteimvllganqaflmglsaflkdgeevliptpa
fvsyapavilaggkpvevptyeedefrlnvdelkkyvtdktraliinspcnptgavltkk
dleeiadfvvehdlivisdevyehfiyddarhysiasldgmfertitvngfsktfamtgw
rlgfvaapswiiermvkfqmynatcpvtfiqyaaakalkderswkaveemrkeydrrrkl
vwkrlnemglptvkpkgafyifprirdtgltskkfselmlkearvavvpgsafgkagegy
vrisyatayekleeamdrmervlkerklv

    Sequence, based on observed residues (ATOM records): (download) 
    >1gdeB (B:)
alsdrlelvsaseirklfdiaagmkdvislgigepdfdtpqhikeyakealdkglthygp
nigllelreaiaeklkkqngieadpkteimvllganqaflmglsaflkdgeevliptpaf
vsyapavilaggkpvevptyeedefrlnvdelkkyvtdktraliinspcnptgavltkkd
leeiadfvvehdlivisdevyehfiyddarhysiasldgmfertitvngfsktfamtgwr
lgfvaapswiiermvkfqmynatcpvtfiqyaaakalkderswkaveemrkeydrrrklv
wkrlnemglptvkpkgafyifprirdtgltskkfselmlkearvavvpgsafgkagegyv
risyatayekleeamdrmervlkerklv