PDB entry 1gax

View 1gax on RCSB PDB site
Description: crystal structure of thermus thermophilus valyl-tRNA synthetase complexed with tRNA(val) and valyl-adenylate analogue
Class: ligase/RNA
Keywords: protein-RNA complex, Rossmann fold, coiled coil, tRNA, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, LIGASE/RNA COMPLEX
Deposited on 2000-06-23, released 2000-12-06
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.245
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: valyl-tRNA synthetase
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1gaxa2, d1gaxa3, d1gaxa4, d1gaxa5
  • Chain 'B':
    Compound: valyl-tRNA synthetase
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d1gaxb2, d1gaxb3, d1gaxb4, d1gaxb5
  • Chain 'C':
    Compound: tRNA(val)
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: tRNA(val)
    Species: synthetic, synthetic
  • Heterogens: ZN, VAA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gaxA (A:)
mdlpkaydpksvepkwaekwaknpfvanpksgkppfvifmpppnvtgslhmghaldnslq
dalirykrmrgfeavwlpgtdhagiatqvvverlllkegktrhdlgrekflervwqwkee
sggtilkqlkrlgasadwsreaftmdekrsravryafsryyheglayraprlvnwcprce
ttlsdleveteptpgklytlryevegggfieiatvrpetvfadqaiavhpederyrhllg
kraripltevwipiladpavekdfgtgalkvtpahdpldyeigerhglkpvsvinlegrm
egervpealrgldrfearrkavelfreaghlvkeedytialatcsrcgtpieyaifpqww
lrmrplaeevlkglrrgdiafvperwkkvnmdwlenvkdwnisrqlwwghqipawycedc
qavnvprperyledptsceacgsprlkrdedvfdtwfssalwplstlgwpeetedlkafy
pgdvlvtgydilflwvsrmevsgyhfmgerpfktvllhglvldekgqkmskskgnvidpl
emverygadalrfaliylatggqdirldlrwlemarnfanklynaarfvllsregfqake
dtptladrfmrsrlsrgveeitalyealdlaqaarevyelvwsefcdwyleaakpalkag
nahtlrtleevlavllkllhpmmpfltselyqaltgkeelaleawpepggrdeeaerafe
alkqavtavralkaeaglppaqevrvylegetapveenlevfrflsradllperpakalv
kamprvtarmpleglldveewrrrqekrlkellalaersqrklaspgfrekapkevveae
earlkenleqaerirealsqig

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1gaxB (B:)
mdlpkaydpksvepkwaekwaknpfvanpksgkppfvifmpppnvtgslhmghaldnslq
dalirykrmrgfeavwlpgtdhagiatqvvverlllkegktrhdlgrekflervwqwkee
sggtilkqlkrlgasadwsreaftmdekrsravryafsryyheglayraprlvnwcprce
ttlsdleveteptpgklytlryevegggfieiatvrpetvfadqaiavhpederyrhllg
kraripltevwipiladpavekdfgtgalkvtpahdpldyeigerhglkpvsvinlegrm
egervpealrgldrfearrkavelfreaghlvkeedytialatcsrcgtpieyaifpqww
lrmrplaeevlkglrrgdiafvperwkkvnmdwlenvkdwnisrqlwwghqipawycedc
qavnvprperyledptsceacgsprlkrdedvfdtwfssalwplstlgwpeetedlkafy
pgdvlvtgydilflwvsrmevsgyhfmgerpfktvllhglvldekgqkmskskgnvidpl
emverygadalrfaliylatggqdirldlrwlemarnfanklynaarfvllsregfqake
dtptladrfmrsrlsrgveeitalyealdlaqaarevyelvwsefcdwyleaakpalkag
nahtlrtleevlavllkllhpmmpfltselyqaltgkeelaleawpepggrdeeaerafe
alkqavtavralkaeaglppaqevrvylegetapveenlevfrflsradllperpakalv
kamprvtarmpleglldveewrrrqekrlkellalaersqrklaspgfrekapkevveae
earlkenleqaerirealsqig

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.