PDB entry 1fyd
View 1fyd on RCSB PDB site
Description: crystal structure of nh3-dependent nad+ synthetase from bacillus subtilis complexed with one molecule amp, one pyrophosphate ion and one mg2+ ion
Class: ligase
Keywords: lyase, amidotransferase, nh3 dependent, pyrophosphatase, ligase
Deposited on
2000-09-28, released
2001-06-06
The last revision prior to the SCOPe 2.08 freeze date was dated
2015-12-30, with a file datestamp of
2015-12-24.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: nh(3)-dependent nad(+) synthetase
Species: Bacillus subtilis [TaxId:1423]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1fyda_ - Chain 'B':
Compound: nh(3)-dependent nad(+) synthetase
Species: Bacillus subtilis [TaxId:1423]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1fydb_ - Heterogens: MG, AMP, POP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1fydA (A:)
smqekimrelhvkpsidpkqeiedrvnflkqyvkktgakgfvlgisggqdstlagrlaql
avesireeggdaqfiavrlphgtqqdeddaqlalkfikpdkswkfdikstvsafsdqyqq
etgdqltdfnkgnvkartrmiaqyaiggqegllvlgtdhaaeavtgfftkygdggadllp
ltgltkrqgrtllkelgaperlylkeptadlldekpqqsdetelgisydeiddylegkev
sakvsealekrysmtehkrqvpasmfddwwk
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1fydB (B:)
smqekimrelhvkpsidpkqeiedrvnflkqyvkktgakgfvlgisggqdstlagrlaql
avesireeggdaqfiavrlphgtqqdeddaqlalkfikpdkswkfdikstvsafsdqyqq
etgdqltdfnkgnvkartrmiaqyaiggqegllvlgtdhaaeavtgfftkygdggadllp
ltgltkrqgrtllkelgaperlylkeptadlldekpqqsdetelgisydeiddylegkev
sakvsealekrysmtehkrqvpasmfddwwk
Sequence, based on observed residues (ATOM records): (download)
>1fydB (B:)
smqekimrelhvkpsidpkqeiedrvnflkqyvkktgakgfvlgisggqdstlagrlaql
avesireeggdaqfiavrlphgeddaqlalkfikpdkswkfdikstvsafsdqyqqetgd
qltdfnkgnvkartrmiaqyaiggqegllvlgtdhaaeavtgfftkygdggadllpltgl
tkrqgrtllkelgaperlylisydeiddylegkevsakvsealekrysmtehkrqvpasm
fddwwk