PDB entry 1frv

View 1frv on RCSB PDB site
Description: crystal structure of the oxidized form of ni-fe hydrogenase
Class: oxidoreductase
Keywords: ni-fe hydrogenase, oxidoreductase
Deposited on 1996-03-28, released 1996-11-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-03-24, with a file datestamp of 2009-03-20.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: 0.178
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hydrogenase
    Species: Desulfovibrio gigas [TaxId:879]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1frva_
  • Chain 'B':
    Compound: hydrogenase
    Species: Desulfovibrio gigas [TaxId:879]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1frvb_
  • Chain 'C':
    Compound: hydrogenase
    Species: Desulfovibrio gigas [TaxId:879]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1frvc_
  • Chain 'D':
    Compound: hydrogenase
    Species: Desulfovibrio gigas [TaxId:879]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1frvd_
  • Heterogens: NI, SF4, F3S, FEL

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1frvA (A:)
ltakkrpsvvylhnaectgcsesllrtvdpyvdelildvismdyhetlmagaghaveeal
heaikgdfvcvieggipmgdggywgkvgrrnmydicaevapkakaviaigtcatyggvqa
akpnptgtvgvnealgklgvkainiagcppnpmnfvgtvvhlltkgmpeldkqgrpvmff
getvhdncprlkhfeagefatsfgspeakkgyclyelgckgpdtynncpkqlfnqvnwpv
qaghpciacsepnfwdlyspfysa

    Sequence, based on observed residues (ATOM records): (download) 
    >1frvA (A:)
akkrpsvvylhnaectgcsesllrtvdpyvdelildvismdyhetlmagaghaveealhe
aikgdfvcvieggipmgdggywgkvgrrnmydicaevapkakaviaigtcatyggvqaak
pnptgtvgvnealgklgvkainiagcppnpmnfvgtvvhlltkgmpeldkqgrpvmffge
tvhdncprlkhfeagefatsfgspeakkgyclyelgckgpdtynncpkqlfnqvnwpvqa
ghpciacsepnfwdlyspfysa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1frvB (B:)
msemqgnkivvdpitrieghlrieveveggkiknawsmstlfrglemilkgrdprdaqhf
tqracgvctyvhalasvravdncvgvkipenatlmrnltmgaqymhdhlvhfyhlhaldw
vnvanalnadpakaarlandlsprkttteslkavqakvkalvesgqlgiftnayflgghp
ayvlpaevdliatahylealrvqvkaaramaifgaknphtqftvvggctnydslrperia
efrklykevrefieqvyitdllavagfyknwagigktsnfltcgefptdeydlnsrytpq
gviwgndlskvddfnpdlieehvkyswyegadahhpykgvtkpkwtefhgedryswmkap
rykgeafevgplasvlvayakkheptvkavdlvlktlgvgpealfstlgrtaargiqclt
aaqevevwldkleanvkagkddlytdwqyptesqgvgfvnaprgmlshwivqrggkienf
qhvvpstwnlgprcaerklsaveqaligtpiadpkrpveilrtvhsydpciacgvh

    Sequence, based on observed residues (ATOM records): (download) 
    >1frvB (B:)
nkivvdpitrieghlrieveveggkiknawsmstlfrglemilkgrdprdaqhftqracg
vctyvhalasvravdncvgvkipenatlmrnltmgaqymhdhlvhfyhlhaldwvnvana
lnadpakaarlandlsprkttteslkavqakvkalvesgqlgiftnayflgghpayvlpa
evdliatahylealrvqvkaaramaifgaknphtqftvvggctnydslrperiaefrkly
kevrefieqvyitdllavagfyknwagigktsnfltcgefptdeydlnsrytpqgviwgn
dlskvddfnpdlieehvkyswyegadahhpykgvtkpkwtefhgedryswmkaprykgea
fevgplasvlvayakkheptvkavdlvlktlgvgpealfstlgrtaargiqcltaaqeve
vwldkleanvkagkddlytdwqyptesqgvgfvnaprgmlshwivqrggkienfqhvvps
twnlgprcaerklsaveqaligtpiadpkrpveilrtvhsydpciacgvh

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1frvC (C:)
ltakkrpsvvylhnaectgcsesllrtvdpyvdelildvismdyhetlmagaghaveeal
heaikgdfvcvieggipmgdggywgkvgrrnmydicaevapkakaviaigtcatyggvqa
akpnptgtvgvnealgklgvkainiagcppnpmnfvgtvvhlltkgmpeldkqgrpvmff
getvhdncprlkhfeagefatsfgspeakkgyclyelgckgpdtynncpkqlfnqvnwpv
qaghpciacsepnfwdlyspfysa

    Sequence, based on observed residues (ATOM records): (download) 
    >1frvC (C:)
akkrpsvvylhnaectgcsesllrtvdpyvdelildvismdyhetlmagaghaveealhe
aikgdfvcvieggipmgdggywgkvgrrnmydicaevapkakaviaigtcatyggvqaak
pnptgtvgvnealgklgvkainiagcppnpmnfvgtvvhlltkgmpeldkqgrpvmffge
tvhdncprlkhfeagefatsfgspeakkgyclyelgckgpdtynncpkqlfnqvnwpvqa
ghpciacsepnfwdlyspfysa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1frvD (D:)
msemqgnkivvdpitrieghlrieveveggkiknawsmstlfrglemilkgrdprdaqhf
tqracgvctyvhalasvravdncvgvkipenatlmrnltmgaqymhdhlvhfyhlhaldw
vnvanalnadpakaarlandlsprkttteslkavqakvkalvesgqlgiftnayflgghp
ayvlpaevdliatahylealrvqvkaaramaifgaknphtqftvvggctnydslrperia
efrklykevrefieqvyitdllavagfyknwagigktsnfltcgefptdeydlnsrytpq
gviwgndlskvddfnpdlieehvkyswyegadahhpykgvtkpkwtefhgedryswmkap
rykgeafevgplasvlvayakkheptvkavdlvlktlgvgpealfstlgrtaargiqclt
aaqevevwldkleanvkagkddlytdwqyptesqgvgfvnaprgmlshwivqrggkienf
qhvvpstwnlgprcaerklsaveqaligtpiadpkrpveilrtvhsydpciacgvh

    Sequence, based on observed residues (ATOM records): (download) 
    >1frvD (D:)
nkivvdpitrieghlrieveveggkiknawsmstlfrglemilkgrdprdaqhftqracg
vctyvhalasvravdncvgvkipenatlmrnltmgaqymhdhlvhfyhlhaldwvnvana
lnadpakaarlandlsprkttteslkavqakvkalvesgqlgiftnayflgghpayvlpa
evdliatahylealrvqvkaaramaifgaknphtqftvvggctnydslrperiaefrkly
kevrefieqvyitdllavagfyknwagigktsnfltcgefptdeydlnsrytpqgviwgn
dlskvddfnpdlieehvkyswyegadahhpykgvtkpkwtefhgedryswmkaprykgea
fevgplasvlvayakkheptvkavdlvlktlgvgpealfstlgrtaargiqcltaaqeve
vwldkleanvkagkddlytdwqyptesqgvgfvnaprgmlshwivqrggkienfqhvvps
twnlgprcaerklsaveqaligtpiadpkrpveilrtvhsydpciacgvh