PDB entry 1fod

View 1fod on RCSB PDB site
Description: structure of a major immunogenic site on foot-and-mouth disease virus
Class: Virus
Keywords: VIRUS, Icosahedral virus
Deposited on 1993-10-27, released 1994-01-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-07.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.208
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: foot and mouth disease virus
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q84771 (0-End)
      • conflict (55)
      • conflict (63)
      • conflict (136)
    Domains in SCOPe 2.08: d1fod1_
  • Chain '2':
    Compound: foot and mouth disease virus
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q84771 (Start-217)
      • conflict (129)
    Domains in SCOPe 2.08: d1fod.1
  • Chain '3':
    Compound: foot and mouth disease virus
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q84771 (0-219)
      • conflict (84)
      • conflict (167)
      • conflict (172)
    Domains in SCOPe 2.08: d1fod3_
  • Chain '4':
    Compound: foot and mouth disease virus
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1fod.1

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download)
    >1fod1 (1:)
    ttsagesadpvtttvenyggetqiqrrqhtdvsfimdrfvkvtpqnqinildlmqvpsht
    lvggllrastyyfsdleiavkhegdltwvpngapekaldnttnptayhkapltrlalpyt
    aphrvlatvyngecrysrnavpnlrgdlqvlaqkvartlptsfnygaikatrvtellyrm
    kraetycprpllaihptearhkqkivapvkqtl
    

    Sequence, based on observed residues (ATOM records): (download)
    >1fod1 (1:)
    ttsagesadpvtttvenyggetqiqrrqhtdvsfimdrfvkvtpqnqinildlmqvpsht
    lvggllrastyyfsdleiavkhegdltwvpngapekaldnttnptayhkapltrlalpyt
    aphrvlatvyngecrysrnavpnlrgdlqvlaqkvartlptsfnygaikatrvtellyrm
    kraetycprpllaihptearhkqkivapvk
    

  • Chain '2':
    Sequence, based on SEQRES records: (download)
    >1fod2 (2:)
    dkkteettlledrilttrnghttsttqssvgvtygyataedfvsgpntsgletrvvqaer
    ffkthlfdwvtsdsfgrchllelptdhkgvygsltdsyaymrngwdvevtavgnqfnggc
    llvamvpelcsiqkrelyqltlfphqfinprtnmtahitvpfvgvnrydqykvhkpwtlv
    vmvvapltvntegapqikvyaniaptnvhvagefpske
    

    Sequence, based on observed residues (ATOM records): (download)
    >1fod2 (2:)
    eettlledrilttrnghttsttqssvgvtygyataedfvsgpntsgletrvvqaerffkt
    hlfdwvtsdsfgrchllelptdhkgvygsltdsyaymrngwdvevtavgnqfnggcllva
    mvpelcsiqkrelyqltlfphqfinprtnmtahitvpfvgvnrydqykvhkpwtlvvmvv
    apltvntegapqikvyaniaptnvhvagefpske
    

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1fod3 (3:)
    gifpvacsdgygglvttdpktadpvygkvfnpprnqlpgrftnlldvaeacptflrfegg
    vpyvttktdsdrvlaqfdmslaakhmsntflaglaqyytqysgtinlhfmftgptdakar
    ymvayappgmeppktpeaaahcihaewdtglnskftfsipylsaadytytasdvaettnv
    qgwvclfqithgkadgdalvvlasagkdfelrlpvdarae
    

  • Chain '4':
    Sequence, based on SEQRES records: (download)
    >1fod4 (4:)
    gagqsspatgsqnqsgntgsiinnyymqqyqnsmdtqlgdnaisggsnegstdttsthtt
    ntqnndwfsklassafsglfgalla
    

    Sequence, based on observed residues (ATOM records): (download)
    >1fod4 (4:)
    sgntgsiinnyymqqyqnsmdtqlgdndwfsklassafsglfgalla