PDB entry 1fne

View 1fne on RCSB PDB site
Description: histocompatibility antigen
Class: immune system
Keywords: histocompatibility antigen, MHC, immune system
Deposited on 2000-08-21, released 2001-03-07
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.231
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (MHC class II I-ek, alpha chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1fnea1, d1fnea2
  • Chain 'B':
    Compound: protein (MHC class II I-ek, beta chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02089 (30-34)
      • mutation (31)
    • GB 199398 (29-End)
    Domains in SCOPe 2.01: d1fneb1, d1fneb2
  • Chain 'C':
    Compound: protein (MHC class II I-ek, alpha chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1fnec1, d1fnec2
  • Chain 'D':
    Compound: protein (MHC class II I-ek, beta chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02089 (30-34)
      • mutation (31)
    • GB 199398 (29-End)
    Domains in SCOPe 2.01: d1fned1, d1fned2
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1fneA (A:)
ikeehtiiqaefyllpdkrgefmfdfdgdeifhvdieksetiwrleefakfasfeaqgal
aniavdkanldvmkersnntpdanvapevtvlsrspvnlgepnilicfidkfsppvvnvt
wlrngrpvtegvsetvflprddhlfrkfhyltflpstddfydcevdhwgleeplrkhwef
eektllpetken

    Sequence, based on observed residues (ATOM records): (download) 
    >1fneA (A:)
ikeehtiiqaefyllpdkrgefmfdfdgdeifhvdieksetiwrleefakfasfeaqgal
aniavdkanldvmkersnntpdanvapevtvlsrspvnlgepnilicfidkfsppvvnvt
wlrngrpvtegvsetvflprddhlfrkfhyltflpstddfydcevdhwgleeplrkhwef
ee

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1fneB (B:)
gkkvitafndglkggggslvgggsggggsrpwfleycksechfyngtqrvrllvryfynl
eenlrfdsdvgefravtelgrpdaenwnsqpefleqkraevdtvcrhnyeifdnflvprr
veptvtvyptktqplehhnllvcsvsdfypgnievrwfrngkeektgivstglvrngdwt
fqtlvmletvpqsgevytcqvehpsltdpvtvewkaqstsaqnk

    Sequence, based on observed residues (ATOM records): (download) 
    >1fneB (B:)
kkvitafndglkggggslvgggsggggsrpwfleycksechfyngtqrvrllvryfynle
enlrfdsdvgefravtelgrpdaenwnsqpefleqkraevdtvcrhnyeifdnflvprrv
eptvtvyptktqplehhnllvcsvsdfypgnievrwfrngkeektgivstglvrngdwtf
qtlvmletvpqsgevytcqvehpsltdpvtvew

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1fneC (C:)
ikeehtiiqaefyllpdkrgefmfdfdgdeifhvdieksetiwrleefakfasfeaqgal
aniavdkanldvmkersnntpdanvapevtvlsrspvnlgepnilicfidkfsppvvnvt
wlrngrpvtegvsetvflprddhlfrkfhyltflpstddfydcevdhwgleeplrkhwef
eektllpetken

    Sequence, based on observed residues (ATOM records): (download) 
    >1fneC (C:)
ikeehtiiqaefyllpdkrgefmfdfdgdeifhvdieksetiwrleefakfasfeaqgal
aniavdkanldvmkersnntpdanvapevtvlsrspvnlgepnilicfidkfsppvvnvt
wlrngrpvtegvsetvflprddhlfrkfhyltflpstddfydcevdhwgleeplrkhwef
ee

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1fneD (D:)
gkkvitafndglkggggslvgggsggggsrpwfleycksechfyngtqrvrllvryfynl
eenlrfdsdvgefravtelgrpdaenwnsqpefleqkraevdtvcrhnyeifdnflvprr
veptvtvyptktqplehhnllvcsvsdfypgnievrwfrngkeektgivstglvrngdwt
fqtlvmletvpqsgevytcqvehpsltdpvtvewkaqstsaqnk

    Sequence, based on observed residues (ATOM records): (download) 
    >1fneD (D:)
kkvitafndglkggggslvgggsggggsrpwfleycksechfyngtqrvrllvryfynle
enlrfdsdvgefravtelgrpdaenwnsqpefleqkraevdtvcrhnyeifdnflvprrv
eptvtvyptktqplehhnllvcsvsdfypgnievrwfrngkeektgivstglvrngdwtf
qtlvmletvpqsgevytcqvehpsltdpvtvew