PDB entry 1fmd

View 1fmd on RCSB PDB site
Description: the structure and antigenicity of a type c foot-and-mouth disease virus
Class: Virus
Keywords: VIRUS, Icosahedral virus
Deposited on 1994-02-10, released 1994-08-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-07.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.204
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: foot-and-mouth disease virus (subunit vp1)
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q65095 (0-End)
      • conflict (45)
      • conflict (98)
      • conflict (111)
      • conflict (128)
      • conflict (152)
    Domains in SCOPe 2.07: d1fmd1_
  • Chain '2':
    Compound: foot-and-mouth disease virus (subunit vp2)
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9YQQ5 (0-217)
      • conflict (20)
      • conflict (49)
      • conflict (121-122)
    Domains in SCOPe 2.07: d1fmd.1
  • Chain '3':
    Compound: foot-and-mouth disease virus (subunit vp3)
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9YQQ5 (0-218)
      • conflict (166)
    Domains in SCOPe 2.07: d1fmd3_
  • Chain '4':
    Compound: foot-and-mouth disease virus (subunit vp4)
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1fmd.1

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1fmd1 (1:)
ttttgesadpvtttvenyggetqvqrrhhtdvafvldrfvkvtvsdnqhtldvmqahkdn
ivgallraatyyfsdleiavthtgkltwvpngapvsalnnttnptayhkgpvtrlalpyt
aphrvlataytgtttytasargdlahlttthaahlptsfnfgavkaetitellvrmkrae
lycprpilpiqptgdrhkqplvapakql

    Sequence, based on observed residues (ATOM records): (download) 
    >1fmd1 (1:)
ttttgesadpvtttvenyggetqvqrrhhtdvafvldrfvkvtvsdnqhtldvmqahkdn
ivgallraatyyfsdleiavthtgkltwvpngapvsalnnttnptayhkgpvtrlalpyt
aphrvlataytgahlptsfnfgavkaetitellvrmkraelycprpilpiqptgdrhkqp
lvapakq

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fmd2 (2:)
dkkteettlledrilttrnghttsttqssvgvtfgyataedstsgpntsaletrvhqaer
ffkmalfdwvpsqnfghmhkvvlphepkgvygglvksyaymrngwdvevtavgnqfnggc
llvalvpemgdisdrekyqltlyphqfinprtnmtahitvpyvgvnrydqykqhrpwtlv
vmvvaplttntagaqqikvyaniaptnvhvagelpske

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1fmd3 (3:)
gifpvacsdgygnmvttdpktadpaygkvynpprtalpgrftnyldvaeacptflmfenv
pyvstrtdgqrllakfdvslaakhmsntylaglaqyytqytgtinlhfmftgptdakary
mvayvppgmdapdnpeeaahcihaewdtglnskftfsipyisaadytytasheaettcvq
gwvcvyqithgkadadalvvsasagkdfelrlpvdarqq

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1fmd4 (4:)
gagqsspatgsqnqsgntgsiinnyymqqyqnsmdtqlgdnaisggsnegstdttsthtt
ntqnndwfsklassafsglfgalla

    Sequence, based on observed residues (ATOM records): (download) 
    >1fmd4 (4:)
sgntgsiinnyymqqyqnsmdtqlgndwfsklassafsglfgalla