PDB entry 1ffo

View 1ffo on RCSB PDB site
Description: crystal structure of murine class I h-2db complexed with synthetic peptide gp33 (c9m/k1a)
Class: immune system/signaling protein
Keywords: major histocompatibility complex, crystallography, peptide binding, T cell receptor, IMMUNE SYSTEM/SIGNALING PROTEIN COMPLEX
Deposited on 2000-07-25, released 2002-12-11
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.246
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: h-2 class I histocompatibility antigen, d-b, alpha chain
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01899 (0-272)
  Domains in SCOPe 2.01: d1ffoa1, d1ffoa2
• Chain 'B':
  Compound: beta-2 microglobulin beta chain
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01887 (1-99)
  Domains in SCOPe 2.01: d1ffob_
• Chain 'C':
  Compound: peptide with sequence ala-ala-val-tyr-asn-phe-ala-thr-met
  Species: synthetic, synthetic
  Database cross-references and differences (RAF-indexed):
  • PDB 1FFO (0-8)
• Chain 'D':
  Compound: h-2 class I histocompatibility antigen, d-b, alpha chain
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01899 (0-272)
  Domains in SCOPe 2.01: d1ffod1, d1ffod2
• Chain 'E':
  Compound: beta-2 microglobulin beta chain
  Species: Mus musculus [TaxId:10090]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01887 (1-99)
  Domains in SCOPe 2.01: d1ffoe_
• Chain 'F':
  Compound: peptide with sequence ala-ala-val-tyr-asn-phe-ala-thr-met
  Species: synthetic, synthetic
  Database cross-references and differences (RAF-indexed):
  • PDB 1FFO (0-8)
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ffoA (A:)
  phsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeywe
  retqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayegr
  dyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatllr
  tdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtf
  qkwasvvvplgkeqnytcrvyheglpepltlrw
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ffoB (B:)
  miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
  wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ffoD (D:)
  phsmryfetavsrpgleepryisvgyvdnkefvrfdsdaenpryeprapwmeqegpeywe
  retqkakgqeqwfrvslrnllgyynqsaggshtlqqmsgcdlgsdwrllrgylqfayegr
  dyialnedlktwtaadmaaqitrrkweqsgaaehykaylegecvewlhrylkngnatllr
  tdspkahvthhprskgevtlrcwalgfypaditltwqlngeeltqdmelvetrpagdgtf
  qkwasvvvplgkeqnytcrvyheglpepltlrw
  

  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1ffoE (E:)
  miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
  wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
  

  
  
• Chain 'F':
  No sequence available.