SCOPe 2.05: Structural Classification of Proteins

PDB entry 1ffk

View 1ffk on RCSB PDB site
Description: crystal structure of the large ribosomal subunit from haloarcula marismortui at 2.4 angstrom resolution
Class: ribosome
Keywords: ribosome assembly, RNA-RNA, protein-RNA, protein-protein
Deposited on 2000-07-25, released 2000-08-14
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.252
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

Chain '0':
Compound: 23s rRNA
Species: Haloarcula marismortui [TaxId:2238]
Chain '1':
Compound: ribosomal protein l6
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P14135 (0-End)
Domains in SCOPe 2.05: d1ffk11, d1ffk12
Chain '9':
Compound: 5s rRNA
Species: Haloarcula marismortui [TaxId:2238]
Chain 'A':
Compound: ribosomal protein l2
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P20276 (0-End)
Domains in SCOPe 2.05: d1ffka1, d1ffka2
Chain 'B':
Compound: ribosomal protein l3
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P20279 (0-336)
  - insertion (310)
Domains in SCOPe 2.05: d1ffkb_
Chain 'C':
Compound: ribosomal protein l4
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P12735 (0-245)
  - conflict (72)
Domains in SCOPe 2.05: d1ffkc_
Chain 'D':
Compound: ribosomal protein l5
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P14124
Domains in SCOPe 2.05: d1ffkd_
Chain 'E':
Compound: ribosomal protein l7ae
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P12743 (Start-118)
  - insertion (107-109)
Domains in SCOPe 2.05: d1ffke_
Chain 'F':
Compound: ribosomal protein l10e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- PDB 1FFK (0-156)
Domains in SCOPe 2.05: d1ffkf_
Chain 'G':
Compound: ribosomal protein l13
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P29198 (Start-144)
Domains in SCOPe 2.05: d1ffkg_
Chain 'H':
Compound: ribosomal protein l14
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P22450 (0-131)
Domains in SCOPe 2.05: d1ffkh_
Chain 'I':
Compound: ribosomal protein l15e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- PDB 1FFK (0-193)
Domains in SCOPe 2.05: d1ffki_
Chain 'J':
Compound: ribosomal protein l15
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P12737 (0-End)
Domains in SCOPe 2.05: d1ffkj_
Chain 'K':
Compound: ribosomal protein l18
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P14123 (0-184)
  - insertion (185)
Domains in SCOPe 2.05: d1ffkk_
Chain 'L':
Compound: ribosomal protein l18e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P12733 (0-114)
Domains in SCOPe 2.05: d1ffkl_
Chain 'M':
Compound: ribosomal protein l19
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P14119 (0-End)
  - conflict (70)
Domains in SCOPe 2.05: d1ffkm_
Chain 'N':
Compound: ribosomal protein l21e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P12734 (0-94)
Domains in SCOPe 2.05: d1ffkn_
Chain 'O':
Compound: ribosomal protein l22
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P10970 (0-End)
Domains in SCOPe 2.05: d1ffko_
Chain 'P':
Compound: ribosomal protein l23
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P12732 (0-End)
Domains in SCOPe 2.05: d1ffkp_
Chain 'Q':
Compound: ribosomal protein l24
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P10972 (0-118)
Domains in SCOPe 2.05: d1ffkq_
Chain 'R':
Compound: ribosomal protein l24e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P14116
Domains in SCOPe 2.05: d1ffkr_
Chain 'S':
Compound: ribosomal protein l29
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P10971 (0-End)
Domains in SCOPe 2.05: d1ffks_
Chain 'T':
Compound: ribosomal protein l30
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P14121 (0-153)
Domains in SCOPe 2.05: d1ffkt_
Chain 'U':
Compound: ribosomal protein l31e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P18138
Domains in SCOPe 2.05: d1ffku_
Chain 'V':
Compound: ribosomal protein l32e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P12736 (0-142)
  - conflict (108)
Domains in SCOPe 2.05: d1ffkv_
Chain 'W':
Compound: ribosomal protein l37ae
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- PDB 1FFK (0-72)
Domains in SCOPe 2.05: d1ffkw_
Chain 'X':
Compound: ribosomal protein l37e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P32410 (0-55)
Domains in SCOPe 2.05: d1ffkx_
Chain 'Y':
Compound: ribosomal protein l39e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P22452 (0-48)
  - conflict (10)
  - conflict (23)
Domains in SCOPe 2.05: d1ffky_
Chain 'Z':
Compound: ribosomal protein l44e
Species: Haloarcula marismortui [TaxId:2238]
Database cross-references and differences (RAF-indexed):
- Uniprot P32411 (0-91)
Domains in SCOPe 2.05: d1ffkz_
Heterogens: CD, K, MG, HOH

PDB Chain Sequences:

Chain '0':
No sequence available.

Chain '1':
Sequence, based on SEQRES records: (download)

>1ffk1 (1:)
prveleipedvdaeqdhlditvegdngsvtrrlwypdidvsvdgdtvviesdednaktms
tigtfqshienmfhgvtegweygmevfyshfpmqvnvegdevvienflgekaprrttihg
dtdveidgeeltvsgpdieavgqtaadieqltrindkdvrvfqdgvyitrkpnrgda

Sequence, based on observed residues (ATOM records): (download)

>1ffk1 (1:)
prveleipedvdaeqdhlditvegdngsvtrrlwypdidvsvdgdtvviesdednaktms
tigtfqshienmfhgvtegweygmevfyshfpmqvnvegdevvienflgekaprrttihg
dtdveidgeeltvsgpdieavgqtaadieqltrindkdvrvfqdgvyitrkp

Chain '9':
No sequence available.

Chain 'A':
Sequence, based on SEQRES records: (download)

>1ffkA (A:)
grriqgqrrgrgtstfrapshrykadlehrkvedgdviagtvvdiehdparsapvaavef
edgdrrlilapegvgvgdelqvgvdaeiapgntlplaeipegvpvcnvesspgdggkfar
asgvnaqllthdrnvavvklpsgemkrldpqcratigvvggggrtdkpfvkagnkhhkmk
argtkwpnvrgvamnavdhpfggggrqhpgkpksisrnappgrkvgdiaskrtgrggne

Sequence, based on observed residues (ATOM records): (download)

>1ffkA (A:)
grriqgqrrgrgtstfrapshrykadlehrkvedgdviagtvvdiehdparsapvaavef
edgdrrlilapegvgvgdelqvgvdaeiapgntlplaeipegvpvcnvesspgdggkfar
asgvnaqllthdrnvavvklpsgemkrldpqcratigvvggggrtdkpfvkagnkhhkmk
argtkwpnvrgvamnavdhpfggggrqhpgkpksisrnappgrkvgdiaskrtgrgg

Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkB (B:)
pqpsrprkgslgfgprkrstsetprfnswpsddgqpgvqgfagykagmthvvlvndepns
pregmetvpvtvietppmravalrayedtpygqrpltevwtdefhseldrtldvpedhdp
daaeeqirdaheagdlgdlrlithtvpdavpsvpkkkpdvmetrvgggsvsdrldhaldi
vedggehamndifrageyadvagvtkgkgtqgpvkrwgvqkrkgkharqgwrrrignlgp
wnpsrvrstvpqqgqtgyhqrtelnkrlidigegdeptvdggfvnygevdgpytlvkgsv
pgpdkrlvpffrpavrpndqprldpevryvsnesnqg

Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkC (C:)
meatiydldgntdgevdlpdvfetpvrsdligkavraaqanrkqdygsdeyaglrtpaes
fgsgrgqahvpkldgrarrvpqavkgrsahppktekdrsldlndkerqlavrsalaatad
adlvadrghefdrdevpvvvsddfedlvktqevvsllealdvhadidradetkikagqgs
argrkyrrpasilfvtsdepstaarnlagadvatasevntedlapggapgrltvftesal
aevaer

Chain 'D':
Sequence, based on SEQRES records: (download)

>1ffkD (D:)
ssesesggdfhemrepriekvvvhmgighggrdlanaedilgeitgqmpvrtkakrtvge
fdiregdpigakvtlrdemaeeflqtalplaelatsqfddtgnfsfgveehtefpsqeyd
psigiygldvtvnlvrpgyrvakrdkasrsiptkhrlnpadavafiestydvevse

Sequence, based on observed residues (ATOM records): (download)

>1ffkD (D:)
fhemrepriekvvvhmgighanaedilgeitgqmpvrtkakrtvgefdiregdpigakvt
lrdemaeeflqtalplaelatsqfddtgnfsfgldvtvnlvrpgyrvakrdkasrsiptk
hrlnpadavafiestydvev

Chain 'E':
Sequence, based on SEQRES records: (download)

>1ffkE (E:)
pvyvdfdvpadleddalealevardtgavkkgtnettksiergsaelvfvaedvqpeeiv
mhipeladekgvpfifveqqddlghaaglevgsaaaavtdagaaatvleeiadkveelr

Sequence, based on observed residues (ATOM records): (download)

>1ffkE (E:)
vyvdfdvpadleddalealevardtgavkkgtnettksiergsaelvfvaedvqpeeivm
hipeladekgvpfifveqqddlghaaglevgsaaaavtdagaaatvleeiadkveelr

Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkF (F:)
kpgahfrnsikpaytrreyisgipgkgiaqfkmgnngagptypaqvenvvekpvqirhna
leaarnaanrfvqnsgaaanykfrirkfpfhvireqdgdgmrapfgksvgtaarshganh
dfiawvnpdpavefawrraymkvtptvnidsspagna

Chain 'G':
Sequence, based on SEQRES records: (download)

>1ffkG (G:)
msvaefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekr
vdigndngyfypkrpdgifkrtirgmlphkkqrgreafesvrvylgnpydedgevldgts
ldrlsnikfvtlgeisetlganktw

Sequence, based on observed residues (ATOM records): (download)

>1ffkG (G:)
aefdadvivdardcimgrvasqvaeqaldgetvavvnaeravitgreeqivekyekrvdi
gndngyfypkrpdgifkrtirgmlphkkqrgreafesvrvylgnpydedgevldgtsldr
lsnikfvtlgeisetlganktw

Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkH (H:)
mealgadvtqglekgslitcadntgarelkvisvhgysgtknrhpkaglgdkitvsvtkg
tpemrrqvleavvvrqrkpirrpdgtrvkfednaavivdenedprgtelkgpiarevaqr
fgsvasaatmiv

Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkI (I:)
mksmyayireawkrpyegyvgelmwhrlqkwrrepavvriprptrldraralgykakkgi
ivvrvrirrggrratrpnkgrkskkmmvnrrprkknlqwiaeeranrkypnmevlnsywv
gedgrykwfevilvdrdhpaiksdpqlswvsrtrgrvyrgltsagrkarglrrkgrgaek
vrpslranfrkkrr

Chain 'J':
Sequence, based on SEQRES records: (download)

>1ffkJ (J:)
tskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqee
aatidvreidenvtllaaddvaevedggfrvdvrdvveeaddadyvkvlgagqvrheltl
iaddfsegarekvegaggsveltdlgeerqaeaeetedadadee

Sequence, based on observed residues (ATOM records): (download)

>1ffkJ (J:)
tskkkrqrgsrthgggshknrrgaghrggrgdagrdkhefhnheplgksgfkrpqkvqee
aatidvreidenvtllaaddvaedvrdvveeaddadyvkvlgagqvrheltliaddfseg
arekvegaggsveltdlgeerqa

Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkK (K:)
atgprykvpmrrrreartdyhqrlrllksgkprlvarksnkhvraqlvtlgpngddtlas
ahssdlaeygweaptgnmpsayltgllaglraqeagveeavldiglnsptpgskvfaiqe
gaidagldiphnddvladwqrtrgahiaeydeqleeplysgdfdaadlpehfdelretll
dgdiel

Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkL (L:)
sktnprlssliadlksaarssggavwgdvaerlekprrthaevnlgrieryaqedetvvv
pgkvlgsgvlqkdvtvaavdfsgtaetkidqvgeavsleqaiennpegshvrvir

Chain 'M':
Sequence, based on SEQRES records: (download)

>1ffkM (M:)
tdlsaqkrlaadvldvgknrvwfnperqgdiadaitredvrelvdegaiqakdkkgnsrg
rarerqkkrakghqkgagsrkgkagarqnskedwesriraqrtklrelrdegtlsssqyr
dlydkagggefdsvadleryidanhgda

Sequence, based on observed residues (ATOM records): (download)

>1ffkM (M:)
tdlsaqkrlaadvldvgknrvwfnperqgdiadaitredvrelvdegaiqakdkkgnsrg
rarerqkkrakghqkgagsrkgkagarqnskedwesriraqrtklrelrdegtlsssqyr
dlydkagggefdsvadleryida

Chain 'N':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkN (N:)
pssngplegtrgklknkprdrgtsppqraveefddgekvhlkidpsvpngrfhprfdgqt
gtvegkqgdaykvdivdggkektiivtaahlrrqe

Chain 'O':
Sequence, based on SEQRES records: (download)

>1ffkO (O:)
gisysveadpdttakamlrerqmsfkhskaiareikgktageavdyleaviegdqpvpfk
qhnsgvghkskvdgwdagrypekaskafldllenavgnadhqgfdgeamtikhvaahkvg
eqqgrkpramgrasawnspqvdvelileepeved

Sequence, based on observed residues (ATOM records): (download)

>1ffkO (O:)
gisysveadpdttakamlrerqmsfkhskaiareikgktageavdyleaviegdqpvpfk
qhnsgvghkskvdgwdagrypekaskafldllenavgnadhqgfdgeamtikhvaahkvg
eqqgrkpramgrasawnspqvdvelileep

Chain 'P':
Sequence, based on SEQRES records: (download)

>1ffkP (P:)
swdvikhphvtekamndmdfqnklqfavddraskgevadaveeqydvtveqvntqntmdg
ekkavvrlsedddaqevasrigvf

Sequence, based on observed residues (ATOM records): (download)

>1ffkP (P:)
swdvikhphvtekamndmdfqnklqfavddraskgevadaveeqydvtveqvntqntmdg
ekkavvrlsedddaqeva

Chain 'Q':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkQ (Q:)
skqpdkqrksqrraplherhkqvratlsadlreeygqrnvrvnagdtvevlrgdfageeg
evinvdldkavihvedvtlektdgeevprpldtsnvrvtdldledekrearleseddsa

Chain 'R':
Sequence, based on SEQRES records: (download)

>1ffkR (R:)
prtrecdycgtdiepgtgtmfvhkdgatthfcsskcennadlgrearnlewtdtargeag
eaedea

Sequence, based on observed residues (ATOM records): (download)

>1ffkR (R:)
recdycgtdiepgtgtmfvhkdgatthfcsskcennadlgrearnlewtdtar

Chain 'S':
Sequence, based on SEQRES records: (download)

>1ffkS (S:)
tvlhvqeirdmtpaereaelddlktellnaravqaaggapenpgrikelrkaiariktiq
geegdlqene

Sequence, based on observed residues (ATOM records): (download)

>1ffkS (S:)
tvlhvqeirdmtpaereaelddlktellnaravqaaggapenpgrikelrkaiariktiq
geegd

Chain 'T':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkT (T:)
mhalvqlrgevnmhtdiqdtlemlnihhvnhctlvpetdayrgmvakvndfvafgepsqe
tletvlatraeplegdadvddewvaehtdyddisglafallseettlreqglsptlrlhp
prgghdgvkhpvkeggqlgkhdtegiddlleamr

Chain 'U':
Sequence, based on SEQRES records: (download)

>1ffkU (U:)
sasdfeervvtiplrdaraepnhkradkamilirehlakhfsvdedavrldpsineaawa
rgrantpskirvraarfeeegeaiveaetae

Sequence, based on observed residues (ATOM records): (download)

>1ffkU (U:)
dfeervvtiplrdaraepnhkradkamilirehlakhfsvdedavrldpsineaawargr
antpskirvraarfeeegeaiveae

Chain 'V':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkV (V:)
qargltektpdlsdedarlltqrhrvgkpqfnrqdhhkkkrvstswrkprgqlskqrrgi
kgkgdtveagfrsptavrgkhpsgfeevrvhnvddlegvdgdteavrinskvgarkreri
eeeaedagirvlnptyvevevse

Chain 'W':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkW (W:)
ptgrfgpryglkirvrvrdveikhkkkykcpvcgfpklkrastsiwvcghcgykiaggay
tpetvagkavmka

Chain 'X':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkX (X:)
tgagtpsqgkknttthtkcrrcgeksyhtkkkvcsscgfgksakrrdyewqskage

Chain 'Y':
Sequence, based on SEQRES records: (download)
```
>1ffkY (Y:)
gkkskatkkrkakldnqnsrvpayvmlktdrevqrnhkrrhwrrndtde
```
Sequence, based on observed residues (ATOM records): (download)
```
>1ffkY (Y:)
gkkskatkkrkakldnqnsrvpayvmlktde
```

Chain 'Z':
Sequence; same for both SEQRES and ATOM records: (download)

>1ffkZ (Z:)
mqmprrfntycphcnehqehevekvrsgrqtgmkwidrqrernsgigndgkfskvpggdk
ptkktdlkyrcgecgkahlregwragrlefqe