PDB entry 1fdz

View 1fdz on RCSB PDB site
Description: n-acetylneuraminate lyase in complex with pyruvate via borohydride reduction
Class: lyase
Keywords: lyase, aldolase, oxo-acid lyase, alpha-keto-acid lyase, carbon-carbon lyase
Deposited on 1996-07-08, released 1997-10-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-04, with a file datestamp of 2018-03-29.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: n-acetylneuraminate lyase
    Species: Escherichia coli [TaxId:562]
    Gene: NPL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6L4
      • conflict (69)
      • conflict (83)
    Domains in SCOPe 2.08: d1fdza_
  • Chain 'B':
    Compound: n-acetylneuraminate lyase
    Species: Escherichia coli [TaxId:562]
    Gene: NPL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6L4
      • conflict (69)
      • conflict (83)
    Domains in SCOPe 2.08: d1fdzb_
  • Chain 'C':
    Compound: n-acetylneuraminate lyase
    Species: Escherichia coli [TaxId:562]
    Gene: NPL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6L4
      • conflict (69)
      • conflict (83)
    Domains in SCOPe 2.08: d1fdzc_
  • Chain 'D':
    Compound: n-acetylneuraminate lyase
    Species: Escherichia coli [TaxId:562]
    Gene: NPL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A6L4
      • conflict (69)
      • conflict (83)
    Domains in SCOPe 2.08: d1fdzd_
  • Heterogens: PYR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1fdzA (A:)
    matnlrgvmaalltpfdqqqaldkaslrrlvqfniqqgidglyvggstgeafvqslsere
    qvleivaeegkgkikliahvgcvttaesqqlaasakrygfdavsavtpfyypfsfeehcd
    hyraiidsadglpmvvynipalsgvkltldqintlvtlpgvgalkqtsgdlyqmeqirre
    hpdlvlyngydeifasgllagadggigstynimgwryqgivkalkegdiqtaqklqtecn
    kvidlliktgvfrglktvlhymdvvsvplcrkpfgpvdekylpelkalaqqlmqerg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1fdzA (A:)
    nlrgvmaalltpfdqqqaldkaslrrlvqfniqqgidglyvggstgeafvqslsereqvl
    eivaeegkgkikliahvgcvttaesqqlaasakrygfdavsavtpfyypfsfeehcdhyr
    aiidsadglpmvvynipalsgvkltldqintlvtlpgvgalkqtsgdlyqmeqirrehpd
    lvlyngydeifasgllagadggigstynimgwryqgivkalkegdiqtaqklqtecnkvi
    dlliktgvfrglktvlhymdvvsvplcrkpfgpvdekylpelkalaqqlmqe
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1fdzB (B:)
    matnlrgvmaalltpfdqqqaldkaslrrlvqfniqqgidglyvggstgeafvqslsere
    qvleivaeegkgkikliahvgcvttaesqqlaasakrygfdavsavtpfyypfsfeehcd
    hyraiidsadglpmvvynipalsgvkltldqintlvtlpgvgalkqtsgdlyqmeqirre
    hpdlvlyngydeifasgllagadggigstynimgwryqgivkalkegdiqtaqklqtecn
    kvidlliktgvfrglktvlhymdvvsvplcrkpfgpvdekylpelkalaqqlmqerg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1fdzB (B:)
    nlrgvmaalltpfdqqqaldkaslrrlvqfniqqgidglyvggstgeafvqslsereqvl
    eivaeegkgkikliahvgcvttaesqqlaasakrygfdavsavtpfyypfsfeehcdhyr
    aiidsadglpmvvynipalsgvkltldqintlvtlpgvgalkqtsgdlyqmeqirrehpd
    lvlyngydeifasgllagadggigstynimgwryqgivkalkegdiqtaqklqtecnkvi
    dlliktgvfrglktvlhymdvvsvplcrkpfgpvdekylpelkalaqqlmq
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1fdzC (C:)
    matnlrgvmaalltpfdqqqaldkaslrrlvqfniqqgidglyvggstgeafvqslsere
    qvleivaeegkgkikliahvgcvttaesqqlaasakrygfdavsavtpfyypfsfeehcd
    hyraiidsadglpmvvynipalsgvkltldqintlvtlpgvgalkqtsgdlyqmeqirre
    hpdlvlyngydeifasgllagadggigstynimgwryqgivkalkegdiqtaqklqtecn
    kvidlliktgvfrglktvlhymdvvsvplcrkpfgpvdekylpelkalaqqlmqerg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1fdzC (C:)
    nlrgvmaalltpfdqqqaldkaslrrlvqfniqqgidglyvggstgeafvqslsereqvl
    eivaeegkgkikliahvgcvttaesqqlaasakrygfdavsavtpfyypfsfeehcdhyr
    aiidsadglpmvvynipalsgvkltldqintlvtlpgvgalkqtsgdlyqmeqirrehpd
    lvlyngydeifasgllagadggigstynimgwryqgivkalkegdiqtaqklqtecnkvi
    dlliktgvfrglktvlhymdvvsvplcrkpfgpvdekylpelkalaqqlmq
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1fdzD (D:)
    matnlrgvmaalltpfdqqqaldkaslrrlvqfniqqgidglyvggstgeafvqslsere
    qvleivaeegkgkikliahvgcvttaesqqlaasakrygfdavsavtpfyypfsfeehcd
    hyraiidsadglpmvvynipalsgvkltldqintlvtlpgvgalkqtsgdlyqmeqirre
    hpdlvlyngydeifasgllagadggigstynimgwryqgivkalkegdiqtaqklqtecn
    kvidlliktgvfrglktvlhymdvvsvplcrkpfgpvdekylpelkalaqqlmqerg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1fdzD (D:)
    nlrgvmaalltpfdqqqaldkaslrrlvqfniqqgidglyvggstgeafvqslsereqvl
    eivaeegkgkikliahvgcvttaesqqlaasakrygfdavsavtpfyypfsfeehcdhyr
    aiidsadglpmvvynipalsgvkltldqintlvtlpgvgalkqtsgdlyqmeqirrehpd
    lvlyngydeifasgllagadggigstynimgwryqgivkalkegdiqtaqklqtecnkvi
    dlliktgvfrglktvlhymdvvsvplcrkpfgpvdekylpelkalaqqlmqe