PDB entry 1f9f

View 1f9f on RCSB PDB site
Description: crystal structure of the hpv-18 e2 DNA-binding domain
Class: transcription
Keywords: Dimeric beta barrel, activator, DNA-binding, trans-acting factor, TRANSCRIPTION
Deposited on 2000-07-10, released 2000-11-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-06-13, with a file datestamp of 2018-06-08.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Regulatory protein E2
    Species: Human papillomavirus - 18 [TaxId:333761]
    Gene: E2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06790 (4-82)
      • expression tag (2-3)
    Domains in SCOPe 2.08: d1f9fa1, d1f9fa2
  • Chain 'B':
    Compound: Regulatory protein E2
    Species: Human papillomavirus - 18 [TaxId:333761]
    Gene: E2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06790 (4-82)
      • expression tag (1-3)
    Domains in SCOPe 2.08: d1f9fb1, d1f9fb2
  • Chain 'C':
    Compound: Regulatory protein E2
    Species: Human papillomavirus - 18 [TaxId:333761]
    Gene: E2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06790 (4-82)
      • expression tag (1-3)
    Domains in SCOPe 2.08: d1f9fc1, d1f9fc2
  • Chain 'D':
    Compound: Regulatory protein E2
    Species: Human papillomavirus - 18 [TaxId:333761]
    Gene: E2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P06790 (4-82)
      • expression tag (1-3)
    Domains in SCOPe 2.08: d1f9fd1, d1f9fd2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1f9fA (A:)
gshmtpiihlkgdrnslkclryrlrkhsdhyrdisstwhwtgagnektgiltvtyhsetq
rtkflntvaipdsvqilvgymtm

    Sequence, based on observed residues (ATOM records): (download) 
    >1f9fA (A:)
hmtpiihlkgdrnslkclryrlrkhsdhyrdisstwhwektgiltvtyhsetqrtkflnt
vaipdsvqilvgymtm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1f9fB (B:)
gshmtpiihlkgdrnslkclryrlrkhsdhyrdisstwhwtgagnektgiltvtyhsetq
rtkflntvaipdsvqilvgymtm

    Sequence, based on observed residues (ATOM records): (download) 
    >1f9fB (B:)
shmtpiihlkgdrnslkclryrlrkhsdhyrdisstwhwtktgiltvtyhsetqrtkfln
tvaipdsvqilvgymtm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1f9fC (C:)
gshmtpiihlkgdrnslkclryrlrkhsdhyrdisstwhwtgagnektgiltvtyhsetq
rtkflntvaipdsvqilvgymtm

    Sequence, based on observed residues (ATOM records): (download) 
    >1f9fC (C:)
shmtpiihlkgdrnslkclryrlrkhsdhyrdisstwhwttgiltvtyhsetqrtkflnt
vaipdsvqilvgymtm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1f9fD (D:)
gshmtpiihlkgdrnslkclryrlrkhsdhyrdisstwhwtgagnektgiltvtyhsetq
rtkflntvaipdsvqilvgymtm

    Sequence, based on observed residues (ATOM records): (download) 
    >1f9fD (D:)
shmtpiihlkgdrnslkclryrlrkhsdhyrdisstwhwtgagnektgiltvtyhsetqr
tkflntvaipdsvqilvgymtm