PDB entry 1f8y

View 1f8y on RCSB PDB site
Description: crystal structure analysis of nucleoside 2-deoxyribosyltransferase complexed with 5-methyl-2'-deoxypseudouridine
Class: transferase
Keywords: active site, alpha/beta protein, biocatalyst, nucleoside, x-ray crystallography, TRANSFERASE
Deposited on 2000-07-05, released 2000-08-09
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.16
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleoside 2-deoxyribosyltransferase
    Species: Lactobacillus leichmannii [TaxId:28039]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1f8ya_
  • Chain 'B':
    Compound: nucleoside 2-deoxyribosyltransferase
    Species: Lactobacillus leichmannii [TaxId:28039]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1f8yb_
  • Heterogens: 5MD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1f8yA (A:)
mpkktiyfgagwftdrqnkaykeamealkenptidlensyvpldnqykgirvdehpeylh
dkvwatatynndlngiktndimlgvyipdeedvglgmelgyalsqgkyvllvipdedygk
pinlmswgvsdnvikmsqlkdfnfnkprfdfyegavy

    Sequence, based on observed residues (ATOM records): (download) 
    >1f8yA (A:)
pkktiyfgagwftdrqnkaykeamealkenptidlensyvpldnqykgirvdehpeylhd
kvwatatynndlngiktndimlgvyipdeedvglgmelgyalsqgkyvllvipdedygkp
inlmswgvsdnvikmsqlkdfnfnkprfdfyegavy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1f8yB (B:)
mpkktiyfgagwftdrqnkaykeamealkenptidlensyvpldnqykgirvdehpeylh
dkvwatatynndlngiktndimlgvyipdeedvglgmelgyalsqgkyvllvipdedygk
pinlmswgvsdnvikmsqlkdfnfnkprfdfyegavy

    Sequence, based on observed residues (ATOM records): (download) 
    >1f8yB (B:)
pkktiyfgagwftdrqnkaykeamealkenptidlensyvpldnqykgirvdehpeylhd
kvwatatynndlngiktndimlgvyipdeedvglgmelgyalsqgkyvllvipdedygkp
inlmswgvsdnvikmsqlkdfnfnkprfdfyegavy