PDB entry 1f8v

View 1f8v on RCSB PDB site
Description: the structure of pariacoto virus reveals a dodecahedral cage of duplex RNA
Class: Virus/RNA
Keywords: nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA cage, gamma polypeptide, beta-sandwich, Icosahedral virus, Virus-RNA COMPLEX
Deposited on 2000-07-05, released 2000-12-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-31, with a file datestamp of 2018-01-26.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: mature capsid protein beta
    Species: Pariacato virus [TaxId:103782]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1f8v.1
  • Chain 'B':
    Compound: mature capsid protein beta
    Species: Pariacato virus [TaxId:103782]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1f8v.2
  • Chain 'C':
    Compound: mature capsid protein beta
    Species: Pariacato virus [TaxId:103782]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1f8v.3
  • Chain 'D':
    Compound: mature capsid protein gamma
    Species: Pariacato virus [TaxId:103782]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1f8v.1
  • Chain 'E':
    Compound: mature capsid protein gamma
    Species: Pariacato virus [TaxId:103782]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1f8v.2
  • Chain 'F':
    Compound: mature capsid protein gamma
    Species: Pariacato virus [TaxId:103782]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1f8v.3
  • Chain 'R':
    Compound: RNA
    Species: Pariacato virus [TaxId:103782]
  • Heterogens: CA, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1f8vA (A:)
nrrnkarkvvsrstalvpmapasqrtgpaprkprkrnqalvrnprltdaglaflkcafaa
pdfsvdpgkgipdnfhgrtlaikdcnttsvvftpntdtyivvapvpgfayfraevavgaq
pttfvgvpyptyatnfgagsqnglpavnnyskfryasmacglyptsnmmqfsgsvqvwrv
dlnlseavnpavtaitpapgvfanfvdkringlrgirplaprdnysgnfidgaytfafdk
stdfewcdfvrslefsesnvlgaatamkllapgggtdttltglgnvntlvykistptgav
ntailrtwncielqpytdsalfqfsgvsppfdplalecyhnlkmrfpvavssren

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1f8vB (B:)
nrrnkarkvvsrstalvpmapasqrtgpaprkprkrnqalvrnprltdaglaflkcafaa
pdfsvdpgkgipdnfhgrtlaikdcnttsvvftpntdtyivvapvpgfayfraevavgaq
pttfvgvpyptyatnfgagsqnglpavnnyskfryasmacglyptsnmmqfsgsvqvwrv
dlnlseavnpavtaitpapgvfanfvdkringlrgirplaprdnysgnfidgaytfafdk
stdfewcdfvrslefsesnvlgaatamkllapgggtdttltglgnvntlvykistptgav
ntailrtwncielqpytdsalfqfsgvsppfdplalecyhnlkmrfpvavssren

    Sequence, based on observed residues (ATOM records): (download) 
    >1f8vB (B:)
nprltdaglaflkcafaapdfsvdpgkgipdnfhgrtlaikdcnttsvvftpntdtyivv
apvpgfayfraevavgaqpttfvgvpyptyatnfgagsqnglpavnnyskfryasmacgl
yptsnmmqfsgsvqvwrvdlnlseavnpavtaitpapgvfanfvdkringlrgirplapr
dnysgnfidgaytfafdkstdfewcdfvrslefsesnvlgaatamkllapgggtdttltg
lgnvntlvykistptgavntailrtwncielqpytdsalfqfsgvsppfdplalecyhnl
kmrfpvavssren

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1f8vC (C:)
nrrnkarkvvsrstalvpmapasqrtgpaprkprkrnqalvrnprltdaglaflkcafaa
pdfsvdpgkgipdnfhgrtlaikdcnttsvvftpntdtyivvapvpgfayfraevavgaq
pttfvgvpyptyatnfgagsqnglpavnnyskfryasmacglyptsnmmqfsgsvqvwrv
dlnlseavnpavtaitpapgvfanfvdkringlrgirplaprdnysgnfidgaytfafdk
stdfewcdfvrslefsesnvlgaatamkllapgggtdttltglgnvntlvykistptgav
ntailrtwncielqpytdsalfqfsgvsppfdplalecyhnlkmrfpvavssren

    Sequence, based on observed residues (ATOM records): (download) 
    >1f8vC (C:)
rltdaglaflkcafaapdfsvdpgkgipdnfhgrtlaikdcnttsvvftpntdtyivvap
vpgfayfraevavgaqpttfvgvpyptyatnfgagsqnglpavnnyskfryasmacglyp
tsnmmqfsgsvqvwrvdlnlseavnpavtaitpapgvfanfvdkringlrgirplaprdn
ysgnfidgaytfafdkstdfewcdfvrslefsesnvlgaatamkllapgggtdttltglg
nvntlvykistptgavntailrtwncielqpytdsalfqfsgvsppfdplalecyhnlkm
rfpvavssren

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1f8vD (D:)
skfwegvlrvlnqisgtlsvipgpvgtisagvhqltgmym

    Sequence, based on observed residues (ATOM records): (download) 
    >1f8vD (D:)
skfwegvlrvlnqisgtlhqltgmym

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1f8vE (E:)
skfwegvlrvlnqisgtlsvipgpvgtisagvhqltgmym

    Sequence, based on observed residues (ATOM records): (download) 
    >1f8vE (E:)
skfwegvlrvlnqisgtlsvip

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1f8vF (F:)
skfwegvlrvlnqisgtlsvipgpvgtisagvhqltgmym

    Sequence, based on observed residues (ATOM records): (download) 
    >1f8vF (F:)
skfwegvlrvlnqisgtlsvip

  • Chain 'R':
    No sequence available.