PDB entry 1f3t

View 1f3t on RCSB PDB site
Description: crystal structure of trypanosoma brucei ornithine decarboxylase (odc) complexed with putrescine, odc's reaction product.
Class: lyase
Keywords: beta-alpha-barrel, modified Greek key beta-sheet, LYASE
Deposited on 2000-06-06, released 2000-11-22
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.237
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ornithine decarboxylase
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1f3ta1, d1f3ta2
  • Chain 'B':
    Compound: ornithine decarboxylase
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1f3tb1, d1f3tb2
  • Chain 'C':
    Compound: ornithine decarboxylase
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1f3tc1, d1f3tc2
  • Chain 'D':
    Compound: ornithine decarboxylase
    Species: Trypanosoma brucei [TaxId:5691]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1f3td1, d1f3td2
  • Heterogens: PLP, PUT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1f3tA (A:)
gamdivvnddlscrflegfntrdalckkismntcdegdpffvadlgdivrkhetwkkclp
rvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigvppekiiyanpckqishi
ryardsgvdvmtfdcvdelekvakthpkakmvlristddslarcrlsvkfgakvedcrfi
leqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhildigggfpg
trdaplkfeeiagvinnalekhfppdlkltivaepgryyvasaftlavnviakkvtpgvq
tdvgahaesnaqsfmyyvndgvygsfncilydhavvrplpqrepipneklypssvwgptc
dgldqiveryylpemqvgewllfedmgaytvvgtssfngfqsptiyyvvsglpdhvvrel
ksqks

    Sequence, based on observed residues (ATOM records): (download) 
    >1f3tA (A:)
rflegfntrdalckkisgdpffvadlgdivrkhetwkkclprvtpfyavkcnddwrvlgt
laalgtgfdcasnteiqrvrgigvppekiiyanpckqishiryardsgvdvmtfdcvdel
ekvakthpkakmvlristvkfgakvedcrfileqakklnidvtgvsfhvgsgstdastfa
qaisdsrfvfdmgtelgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppdlkl
tivaepgryyvasaftlavnviakkvtqsfmyyvndgvygsfncilydhavvrplpqrep
ipneklypssvwgptcdgldqiveryylpemqvgewllfedmgaytvvgtssfngfqspt
iyyvvsglpdhvvrelks

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1f3tB (B:)
gamdivvnddlscrflegfntrdalckkismntcdegdpffvadlgdivrkhetwkkclp
rvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigvppekiiyanpckqishi
ryardsgvdvmtfdcvdelekvakthpkakmvlristddslarcrlsvkfgakvedcrfi
leqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhildigggfpg
trdaplkfeeiagvinnalekhfppdlkltivaepgryyvasaftlavnviakkvtpgvq
tdvgahaesnaqsfmyyvndgvygsfncilydhavvrplpqrepipneklypssvwgptc
dgldqiveryylpemqvgewllfedmgaytvvgtssfngfqsptiyyvvsglpdhvvrel
ksqks

    Sequence, based on observed residues (ATOM records): (download) 
    >1f3tB (B:)
rflegfntrdalckkisgdpffvadlgdivrkhetwkkclprvtpfyavkcnddwrvlgt
laalgtgfdcasnteiqrvrgigvppekiiyanpckqishiryardsgvdvmtfdcvdel
ekvakthpkakmvlristdlsvkfgakvedcrfileqakklnidvtgvsfhvgsgstdas
tfaqaisdsrfvfdmgtelgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppd
lkltivaepgryyvasaftlavnviakkvtqsfmyyvndgvygsfncilydhavvrplpq
repipneklypssvwgptcdgldqiveryylpemqvgewllfedmgaytvvgtssfngfq
sptiyyvvsglpdhvvrelks

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1f3tC (C:)
gamdivvnddlscrflegfntrdalckkismntcdegdpffvadlgdivrkhetwkkclp
rvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigvppekiiyanpckqishi
ryardsgvdvmtfdcvdelekvakthpkakmvlristddslarcrlsvkfgakvedcrfi
leqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhildigggfpg
trdaplkfeeiagvinnalekhfppdlkltivaepgryyvasaftlavnviakkvtpgvq
tdvgahaesnaqsfmyyvndgvygsfncilydhavvrplpqrepipneklypssvwgptc
dgldqiveryylpemqvgewllfedmgaytvvgtssfngfqsptiyyvvsglpdhvvrel
ksqks

    Sequence, based on observed residues (ATOM records): (download) 
    >1f3tC (C:)
rflegfntrdalckkisgdpffvadlgdivrkhetwkkclprvtpfyavkcnddwrvlgt
laalgtgfdcasnteiqrvrgigvppekiiyanpckqishiryardsgvdvmtfdcvdel
ekvakthpkakmvlristddrlsvkfgakvedcrfileqakklnidvtgvsfhvgsgstd
astfaqaisdsrfvfdmgtelgfnmhildigggfpgtrdaplkfeeiagvinnalekhfp
pdlkltivaepgryyvasaftlavnviakkvtqsfmyyvndgvygsfncilydhavvrpl
pqrepipneklypssvwgptcdgldqiveryylpemqvgewllfedmgaytvvgtssfng
fqsptiyyvv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1f3tD (D:)
gamdivvnddlscrflegfntrdalckkismntcdegdpffvadlgdivrkhetwkkclp
rvtpfyavkcnddwrvlgtlaalgtgfdcasnteiqrvrgigvppekiiyanpckqishi
ryardsgvdvmtfdcvdelekvakthpkakmvlristddslarcrlsvkfgakvedcrfi
leqakklnidvtgvsfhvgsgstdastfaqaisdsrfvfdmgtelgfnmhildigggfpg
trdaplkfeeiagvinnalekhfppdlkltivaepgryyvasaftlavnviakkvtpgvq
tdvgahaesnaqsfmyyvndgvygsfncilydhavvrplpqrepipneklypssvwgptc
dgldqiveryylpemqvgewllfedmgaytvvgtssfngfqsptiyyvvsglpdhvvrel
ksqks

    Sequence, based on observed residues (ATOM records): (download) 
    >1f3tD (D:)
rflegfntrdalckkisgdpffvadlgdivrkhetwkkclprvtpfyavkcnddwrvlgt
laalgtgfdcasnteiqrvrgigvppekiiyanpckqishiryardsgvdvmtfdcvdel
ekvakthpkakmvlristlsvkfgakvedcrfileqakklnidvtgvsfhvgsgstdast
faqaisdsrfvfdmgtelgfnmhildigggfpgtrdaplkfeeiagvinnalekhfppdl
kltivaepgryyvasaftlavnviakkvtqsfmyyvndgvygsfncilydhavvrplpqr
epipneklypssvwgptcdgldqiveryylpemqvgewllfedmgaytvvgtssfngfqs
ptiyyvv