PDB entry 1f38
View 1f38 on RCSB PDB site
Description: x-ray crystallographic structure of precorrin 8w decarboxylase, the product of gene mt0146 in the methanobacterium thermoautotrophicum genome
Class: lyase
Keywords: Decarboxylase, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, LYASE
Deposited on
2000-05-31, released
2003-06-10
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.236
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: precorrin-8w decarboxylase
Species: Methanothermobacter thermautotrophicus [TaxId:145262]
Gene: MT0146
Database cross-references and differences (RAF-indexed):
- Uniprot O26249
- modified residue (0)
- modified residue (18)
- modified residue (25)
- modified residue (72)
- modified residue (86)
- modified residue (143)
- modified residue (171-172)
Domains in SCOPe 2.01: d1f38a_ - Chain 'B':
Compound: precorrin-8w decarboxylase
Species: Methanothermobacter thermautotrophicus [TaxId:145262]
Gene: MT0146
Database cross-references and differences (RAF-indexed):
- Uniprot O26249
- modified residue (0)
- modified residue (18)
- modified residue (25)
- modified residue (72)
- modified residue (86)
- modified residue (143)
- modified residue (171-172)
Domains in SCOPe 2.01: d1f38b_ - Chain 'C':
Compound: precorrin-8w decarboxylase
Species: Methanothermobacter thermautotrophicus [TaxId:145262]
Gene: MT0146
Database cross-references and differences (RAF-indexed):
- Uniprot O26249
- modified residue (0)
- modified residue (18)
- modified residue (25)
- modified residue (72)
- modified residue (86)
- modified residue (143)
- modified residue (171-172)
Domains in SCOPe 2.01: d1f38c_ - Chain 'D':
Compound: precorrin-8w decarboxylase
Species: Methanothermobacter thermautotrophicus [TaxId:145262]
Gene: MT0146
Database cross-references and differences (RAF-indexed):
- Uniprot O26249 (0-End)
- modified residue (0)
- modified residue (18)
- modified residue (25)
- modified residue (72)
- modified residue (86)
- modified residue (143)
- modified residue (171-172)
Domains in SCOPe 2.01: d1f38d_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1f38A (A:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd
Sequence, based on observed residues (ATOM records): (download)
>1f38A (A:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1f38B (B:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd
Sequence, based on observed residues (ATOM records): (download)
>1f38B (B:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1f38C (C:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd
Sequence, based on observed residues (ATOM records): (download)
>1f38C (C:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1f38D (D:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgvshenkd
Sequence, based on observed residues (ATOM records): (download)
>1f38D (D:)
mipddefiknpsvpgptamevrclimclaepgkndvavdvgcgtggvtlelagrvrrvya
idrnpeaisttemnlqrhglgdnvtlmegdapealckipdidiavvggsggelqeilrii
kdklkpggriivtailletkfeameclrdlgfdvnitelniargraldrgtmmvsrnpva
liytgv