PDB entry 1f2n

View 1f2n on RCSB PDB site
Description: rice yellow mottle virus
Class: Virus
Keywords: PLANT VIRUS, CAPSID PROTEIN, COAT PROTEIN, BETA-ANNULUS, DOMAIN SWAPPING, X-RAY DIFFRACTION, Icosahedral virus
Deposited on 2000-05-26, released 2000-11-01
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.218
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Rice yellow mottle virus [TaxId:31744]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1f2na_
  • Chain 'B':
    Compound: capsid protein
    Species: Rice yellow mottle virus [TaxId:31744]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1f2nb_
  • Chain 'C':
    Compound: capsid protein
    Species: Rice yellow mottle virus [TaxId:31744]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1f2nc_
  • Heterogens: CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1f2nA (A:)
arkgkktnsnqgqqgkrksrrprgrsaepqlqrapvaqasrisgtvpgplssntwplhsv
efladfkrsstsadattydcvpfnlprvwslarcysmwkptrwdvvylpevsatvagsie
mcflydyadtiprytgkmsrtagfvtssvwygaegchllsggsarnavvasmdcsrvgwk
rvtssipssvdpnvvntilparlavrssikptvsdtpgklyviasmvlrdpvdptlnt

    Sequence, based on observed residues (ATOM records): (download) 
    >1f2nA (A:)
lssntwplhsvefladfkrsstsadattydcvpfnlprvwslarcysmwkptrwdvvylp
evsatvagsiemcflydyadtiprytgkmsrtagfvtssvwygaegchllsggsarnavv
asmdcsrvgwkrvtssipssvdpnvvntilparlavrssikptvsdtpgklyviasmvlr
dpvdptlnt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1f2nB (B:)
arkgkktnsnqgqqgkrksrrprgrsaepqlqrapvaqasrisgtvpgplssntwplhsv
efladfkrsstsadattydcvpfnlprvwslarcysmwkptrwdvvylpevsatvagsie
mcflydyadtiprytgkmsrtagfvtssvwygaegchllsggsarnavvasmdcsrvgwk
rvtssipssvdpnvvntilparlavrssikptvsdtpgklyviasmvlrdpvdptlnt

    Sequence, based on observed residues (ATOM records): (download) 
    >1f2nB (B:)
lssntwplhsvefladfkrsstsadattydcvpfnlprvwslarcysmwkptrwdvvylp
evsatvagsiemcflydyadtiprytgkmsrtagfvtssvwygaegchllsggsarnavv
asmdcsrvgwkrvtssipssvdpnvvntilparlavrssikptvsdtpgklyviasmvlr
dpvdptlnt

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1f2nC (C:)
arkgkktnsnqgqqgkrksrrprgrsaepqlqrapvaqasrisgtvpgplssntwplhsv
efladfkrsstsadattydcvpfnlprvwslarcysmwkptrwdvvylpevsatvagsie
mcflydyadtiprytgkmsrtagfvtssvwygaegchllsggsarnavvasmdcsrvgwk
rvtssipssvdpnvvntilparlavrssikptvsdtpgklyviasmvlrdpvdptlnt

    Sequence, based on observed residues (ATOM records): (download) 
    >1f2nC (C:)
aepqlqrapvaqasrisgtvpgplssntwplhsvefladfkrsstsadattydcvpfnlp
rvwslarcysmwkptrwdvvylpevsatvagsiemcflydyadtiprytgkmsrtagfvt
ssvwygaegchllsggsarnavvasmdcsrvgwkrvtssipssvdpnvvntilparlavr
ssikptvsdtpgklyviasmvlrdpvdptlnt