PDB entry 1eqz

View 1eqz on RCSB PDB site
Description: x-ray structure of the nucleosome core particle at 2.5 a resolution
Class: structural protein/DNA
Keywords: nucleosome, nucleosome core particle, histone, microgravity histone octamer, DNA palindrome, DNA protein complex, chromatin, chromosomal protein, histone fold, bent DNA, structural protein-DNA complex
Deposited on 2000-04-06, released 2000-04-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-04, with a file datestamp of 2017-09-29.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (histone h2a)
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1eqza_
  • Chain 'B':
    Compound: protein (histone h2b)
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1eqzb_
  • Chain 'C':
    Compound: protein (histone h3)
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1eqzc_
  • Chain 'D':
    Compound: protein (histone h4)
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1eqzd_
  • Chain 'E':
    Compound: protein (histone h2a)
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1eqze_
  • Chain 'F':
    Compound: protein (histone h2b)
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1eqzf_
  • Chain 'G':
    Compound: protein (histone h3)
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1eqzg_
  • Chain 'H':
    Compound: protein (histone h4)
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1eqzh_
  • Chain 'I':
    Compound: 146 nucleotides long DNA
    Species: synthetic, synthetic
  • Chain 'J':
    Compound: 146 nucleotides long DNA
    Species: synthetic, synthetic
  • Heterogens: K, MN, CL, CAC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1eqzA (A:)
msgrgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
aeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkk
tdshkakak

    Sequence, based on observed residues (ATOM records): (download) 
    >1eqzA (A:)
sgrgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
eilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkkt
dshka

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1eqzB (B:)
mpepaksapapkkgskkavtktqkkgdkkrkksrkesysiyvykvlkqvhpdtgisskam
gimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
kytssk

    Sequence, based on observed residues (ATOM records): (download) 
    >1eqzB (B:)
vtktqkkgdkkrkksrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiagea
srlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1eqzC (C:)
martkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkste
llirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcaihakrvti
mpkdiqlarrirgera

    Sequence, based on observed residues (ATOM records): (download) 
    >1eqzC (C:)
apatggvkkphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssa
vmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1eqzD (D:)
msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1eqzD (D:)
gakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyt
ehakrktvtamdvvyalkrqgrtlygfgg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1eqzE (E:)
msgrgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylt
aeilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkk
tdshkakak

    Sequence, based on observed residues (ATOM records): (download) 
    >1eqzE (E:)
grgkqggkarakaksrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltae
ilelagnaardnkktriiprhlqlairndeelnkllgkvtiaqggvlpniqavllpkktd
shkakak

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1eqzF (F:)
mpepaksapapkkgskkavtktqkkgdkkrkksrkesysiyvykvlkqvhpdtgisskam
gimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavt
kytssk

    Sequence, based on observed residues (ATOM records): (download) 
    >1eqzF (F:)
tktqkkgdkkrkksrkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageas
rlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytssk

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1eqzG (G:)
martkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkste
llirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvglfedtnlcaihakrvti
mpkdiqlarrirgera

    Sequence, based on observed residues (ATOM records): (download) 
    >1eqzG (G:)
prkqlatkaarksapatggvkkphryrpgtvalreirryqkstellirklpfqrlvreia
qdfktdlrfqssavmalqeaseaylvglfedtnlcaihakrvtimpkdiqlarrirgera

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1eqzH (H:)
msgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlk
vflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg

    Sequence, based on observed residues (ATOM records): (download) 
    >1eqzH (H:)
kglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvir
davtytehakrktvtamdvvyalkrqgrtlygfgg

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.