PDB entry 1ejo

View 1ejo on RCSB PDB site
Description: fab fragment of neutralising monoclonal antibody 4c4 complexed with g-h loop from fmdv.
Class: immune system
Keywords: FMDV, antigenic-antibody interactions, RGD motif, G-H loop of VP1., IMMUNE SYSTEM
Deposited on 2000-03-03, released 2000-03-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-31, with a file datestamp of 2018-01-26.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: igg2a monoclonal antibody (heavy chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1EJO (Start-219)
    Domains in SCOPe 2.08: d1ejoh1, d1ejoh2
  • Chain 'L':
    Compound: igg2a monoclonal antibody (light chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1EJO (0-215)
    Domains in SCOPe 2.08: d1ejol1, d1ejol2
  • Chain 'P':
    Compound: fmdv peptide
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • GB AAA42624 (0-End)
      • conflict (11)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1ejoH (H:)
eqmlvesggdlvkpggslklscaasgftfssytmswvrqtpekrlewvatissggaytyy
pdsvkgrftisddnaestlylqmsslrsedtamyycvrrafdsdvgfaswghrtlvtvsa
akttapsvyplapvcggttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsd
lytlsssvtvtsstwpsqsitcnvahpasstkvdkkiepr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ejoH (H:)
qmlvesggdlvkpggslklscaasgftfssytmswvrqtpekrlewvatissggaytyyp
dsvkgrftisddnaestlylqmsslrsedtamyycvrrafdsdvgfaswghrtlvtvsaa
kttapsvyplapvcgsvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlss
svtvtsstwpsqsitcnvahpasstkvdkkiepr

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1ejoL (L:)
divltqspaslavslgqratiscrasesvdsygnsfmhwyqqkpgqppklliyrasnles
giparfsgsgsrtdftltinpveaddvatyycqqsnedpltfgagtklelkradaaptvs
ifppsseqltsggasvvcflnnfypkdinvrwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnra

  • Chain 'P':
    No sequence available.