PDB entry 1ed3
View 1ed3 on RCSB PDB site
Description: crystal structure of rat minor histocompatibility antigen complex rt1-aa/mtf-e.
Class: immune system
Keywords: major histocompatibility complex, rat minor histocompatibility complex, MHC, immunology, peptide antigen presentation, cellular immunity, cell surface receptor, T cell receptor ligand, IMMUNE SYSTEM
Deposited on
2000-01-26, released
2001-02-28
The last revision prior to the SCOPe 2.02 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.222
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: class I major histocompatibility antigen rt1-aa
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1ed3a1, d1ed3a2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1ed3b_ - Chain 'C':
Compound: peptide mtf-e (13n3e)
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: class I major histocompatibility antigen rt1-aa
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1ed3d1, d1ed3d2 - Chain 'E':
Compound: Beta-2-microglobulin
Species: Rattus norvegicus [TaxId:10116]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d1ed3e_ - Chain 'F':
Compound: peptide mtf-e (13n3e)
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1ed3A (A:)
gshslryfytavsrpglgeprfiavgyvddtefvrfdsdaenprmeprarwmeregpeyw
eqqtriakeweqiyrvdlrtlrgyynqseggshtiqemygcdvgsdgsllrgyrqdaydg
rdyialnedlktwtaadfaaqitrnkweraryaerlraylegtcvewlsrylelgketll
rsdppeahvtlhprpegdvtlrcwalgfypaditltwqlngedltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrveheglpkplsqrwe
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1ed3B (B:)
iqktpqiqvysrhppengkpnflncyvsqfhppqieiellkngkkipniemsdlsfskdw
sfyilahteftptetdvyacrvkhvtlkepktvtwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1ed3D (D:)
gshslryfytavsrpglgeprfiavgyvddtefvrfdsdaenprmeprarwmeregpeyw
eqqtriakeweqiyrvdlrtlrgyynqseggshtiqemygcdvgsdgsllrgyrqdaydg
rdyialnedlktwtaadfaaqitrnkweraryaerlraylegtcvewlsrylelgketll
rsdppeahvtlhprpegdvtlrcwalgfypaditltwqlngedltqdmelvetrpagdgt
fqkwasvvvplgkeqnytcrveheglpkplsqrwe
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1ed3E (E:)
iqktpqiqvysrhppengkpnflncyvsqfhppqieiellkngkkipniemsdlsfskdw
sfyilahteftptetdvyacrvkhvtlkepktvtwdrdm
- Chain 'F':
No sequence available.