PDB entry 1e8o

View 1e8o on RCSB PDB site
Description: core of the alu domain of the mammalian srp
Class: alu ribonucleoprotein particle
Keywords: alu ribonucleoprotein particle, protein recognition of an RNA u-turn, translational control, alu rnp assembly and transport, alu retroposition
Deposited on 2000-09-28, released 2000-11-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.245
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: signal recognition particle 9 kda protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e8oa_
  • Chain 'B':
    Compound: signal recognition particle 14 kda protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e8ob_
  • Chain 'C':
    Compound: signal recognition particle 9 kda protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e8oc_
  • Chain 'D':
    Compound: signal recognition particle 14 kda protein
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e8od_
  • Chain 'E':
    Compound: 7sl RNA
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1e8oA (A:)
pqyqtweefsraaeklyladpmkarvvlkyrhsdgnlcvkvtddlvclvyktdqaqdvkk
iekfhsqlmrlmvakearnvtmete

    Sequence, based on observed residues (ATOM records): (download) 
    >1e8oA (A:)
pqyqtweefsraaeklyladpmkarvvlkyrhsdgnlcvkvtddlvclvyktdqaqdvkk
iekfhsqlmrlmva

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1e8oB (B:)
vlleseqflteltrlfqkcrtsgsvyitlkkydgrtkpipkkgtvegfepadnkcllrat
dgkkkistvvsskevnkfqmaysnllranmdglkkrdkknktkktk

    Sequence, based on observed residues (ATOM records): (download) 
    >1e8oB (B:)
vlleseqflteltrlfqkcrtsgsvyitlkkydnkcllratdgkkkistvvsskevnkfq
maysnllranmdglk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1e8oC (C:)
pqyqtweefsraaeklyladpmkarvvlkyrhsdgnlcvkvtddlvclvyktdqaqdvkk
iekfhsqlmrlmvakearnvtmete

    Sequence, based on observed residues (ATOM records): (download) 
    >1e8oC (C:)
qtweefsraaeklyladpmkarvvlkyrhsdgnlcvkvtddlvclvyktdqaqdvkkiek
fhsqlmrlmva

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1e8oD (D:)
vlleseqflteltrlfqkcrtsgsvyitlkkydgrtkpipkkgtvegfepadnkcllrat
dgkkkistvvsskevnkfqmaysnllranmdglkkrdkknktkktk

    Sequence, based on observed residues (ATOM records): (download) 
    >1e8oD (D:)
vlleseqflteltrlfqkcrtsgsvyitlkkydgnkcllratdgkkkistvvsskevnkf
qmaysnllranmdglk

  • Chain 'E':
    No sequence available.