PDB entry 1e6y

View 1e6y on RCSB PDB site
Description: Methyl-coenzyme M reductase from Methanosarcina barkeri
Class: oxidoreductase
Keywords: biological methanogenesis, ni-enzyme, oxidoreductase, ni enzyme
Deposited on 2000-08-23, released 2000-10-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: methyl-coenzyme m reductase subunit alpha
    Species: METHANOSARCINA BARKERI [TaxId:2208]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6ya1, d1e6ya2
  • Chain 'B':
    Compound: methyl-coenzyme m reductase I beta subunit
    Species: METHANOSARCINA BARKERI [TaxId:2208]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6yb1, d1e6yb2
  • Chain 'C':
    Compound: methyl-coenzyme m reductase subunit gamma
    Species: METHANOSARCINA BARKERI [TaxId:2208]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6yc_
  • Chain 'D':
    Compound: methyl-coenzyme m reductase subunit alpha
    Species: METHANOSARCINA BARKERI [TaxId:2208]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6yd1, d1e6yd2
  • Chain 'E':
    Compound: methyl-coenzyme m reductase I beta subunit
    Species: METHANOSARCINA BARKERI [TaxId:2208]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6ye1, d1e6ye2
  • Chain 'F':
    Compound: methyl-coenzyme m reductase subunit gamma
    Species: METHANOSARCINA BARKERI [TaxId:2208]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1e6yf_
  • Heterogens: F43, TP7, COM, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1e6yA (A:)
aadifskfkkdmevkfaqefgsnkqtggditdktakflrlgpeqdprkvemikagkeiae
krgiafynpmmhsgaplgqraitpytisgtdivcepddlhyvnnaamqqmwddirrtciv
gldmahetlekrlgkevtpetinhylevlnhampgaavvqemmvethpalvddcyvkvft
gddaladeidkqflidinkefseeqaaqikasigktswqaihiptivsrttdgaqtsrwa
amqigmsfisayamcageaavadlsfaakhaalvsmgemlparrargpnepgglsfghls
divqtsrvsedpakialevvgagcmlydqiwlgsymsggvgftqyataaytddildnnty
ydvdyindkyngaatvgkdnkvkaslevvkdiatestlygietyekfptaledhfggsqr
atvlaaaagvacslatgnanaglsgwylsmylhkeawgrlgffgfdlqdqcgatnvlsyq
gdeglpdelrgpnypnyamnvghqggyagiaqaahsgrgdaftvnpllkvcfaddllpfn
faeprrefgrgairefvpagerslvipak

    Sequence, based on observed residues (ATOM records): (download) 
    >1e6yA (A:)
aadifskfkkdmevkfaqefgsnkqtggditdktakflrlgpeqdprkvemikagkeiae
krgiafynpmmhsgaplgqraitpytisgtdivcepddlhyvnnaamqqmwddirrtciv
gldmahetlekrlgkevtpetinhylevlnhampgaavvqemmvethpalvddcyvkvft
gddaladeidkqflidinkefseeqaaqikasigktswqaihiptivsrttdgaqtsrwa
amqigmsfisayamcageaavadlsfaakhaalvsmgemlparrargpnepgglsfghls
divqtsrvsedpakialevvgagcmlydqiwlgsymsggvgftqyataaytddildnnty
ydvdyindkyngaatvgkdnkvkaslevvkdiatestlygietyekfptaledhfggsqr
atvlaaaagvacslatgnanaglsgwylsmylhkeawgrlgffgfdlqdqcgatnvlsyq
gdeglpdelrgpnypnyamnvghqggyagiaqaahsgrgdaftvnpllkvcfaddllpfn
faeprrefgrgairefvpagerslvipa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1e6yB (B:)
sdtvdiyddrgkllesnvdimslaptrnaaiqsiimdtkrsvavnlagiqgalasgkmgg
kgrqilgrglnydivgnadaiaenvkklvqvdegddtnvikvkggkslliqspksriiag
adfmsattvgaaavtqtimdmfgtdpydapivksavwgsypqtmdlmggqvqgilsipqn
neglgfslrnimanhvaaisnrnamnasalssiyeqsgifemggavgmferhqllglayq
glnannllydivkengkdgtigtviesvvrraieagiisvdktapsgynfykandvpkwn
acaavgtlaatlvncgagraaqnvsstllyfndileketglpgcdygkvegtavgfsffs
hsiyggggpgvfngnhvvtrhsrgfaipcvcaavaldagtqmfsiestsgligdvfgaip
efrepikavagvl

    Sequence, based on observed residues (ATOM records): (download) 
    >1e6yB (B:)
sdtvdiyddrgkllesnvdimslaptrnaaiqsiimdtkrsvavnlagiqgalasgkmgg
kgrqilgrglnydivgnadaiaenvkklvqvdegddtnvikvkggkslliqspksriiag
adfmsattvgaaavtqtimdmfgtdpydapivksavwgsypqtmdlmggqvqgilsipqn
neglgfslrnimanhvaaisnrnamnasalssiyeqsgifemggavgmferhqllglayq
glnannllydivkengkdgtigtviesvvrraieagiisvdktapsgynfykandvpkwn
acaavgtlaatlvncgagraaqnvsstllyfndileketglpgcdygkvegtavgfsffs
hsiyggggpgvfngnhvvtrhsrgfaipcvcaavaldagtqmfsiestsgligdvfgaip
efrepikavagv

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1e6yC (C:)
ayerqyypgatsvaanrrkhmsgkleklreisdedltavlghrapgsdypsthpplaemg
epacstrenvaatpgaaagdrvryiqfadsmynapatpyfrsyfaainfrgvdpgtlsgr
qivearerdmeqcakvqmeteitdhalagvrgatvhghsvrlqedgvmfdmldrrrleng
tiimdkdqvaipldrkvdlgkpmsseeaakrttiyrvdnvafrddaevvewvhrifdqrt
kfgfqpk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1e6yD (D:)
aadifskfkkdmevkfaqefgsnkqtggditdktakflrlgpeqdprkvemikagkeiae
krgiafynpmmhsgaplgqraitpytisgtdivcepddlhyvnnaamqqmwddirrtciv
gldmahetlekrlgkevtpetinhylevlnhampgaavvqemmvethpalvddcyvkvft
gddaladeidkqflidinkefseeqaaqikasigktswqaihiptivsrttdgaqtsrwa
amqigmsfisayamcageaavadlsfaakhaalvsmgemlparrargpnepgglsfghls
divqtsrvsedpakialevvgagcmlydqiwlgsymsggvgftqyataaytddildnnty
ydvdyindkyngaatvgkdnkvkaslevvkdiatestlygietyekfptaledhfggsqr
atvlaaaagvacslatgnanaglsgwylsmylhkeawgrlgffgfdlqdqcgatnvlsyq
gdeglpdelrgpnypnyamnvghqggyagiaqaahsgrgdaftvnpllkvcfaddllpfn
faeprrefgrgairefvpagerslvipak

    Sequence, based on observed residues (ATOM records): (download) 
    >1e6yD (D:)
aadifskfkkdmevkfaqefgsnkqtggditdktakflrlgpeqdprkvemikagkeiae
krgiafynpmmhsgaplgqraitpytisgtdivcepddlhyvnnaamqqmwddirrtciv
gldmahetlekrlgkevtpetinhylevlnhampgaavvqemmvethpalvddcyvkvft
gddaladeidkqflidinkefseeqaaqikasigktswqaihiptivsrttdgaqtsrwa
amqigmsfisayamcageaavadlsfaakhaalvsmgemlparrargpnepgglsfghls
divqtsrvsedpakialevvgagcmlydqiwlgsymsggvgftqyataaytddildnnty
ydvdyindkyngaatvgkdnkvkaslevvkdiatestlygietyekfptaledhfggsqr
atvlaaaagvacslatgnanaglsgwylsmylhkeawgrlgffgfdlqdqcgatnvlsyq
gdeglpdelrgpnypnyamnvghqggyagiaqaahsgrgdaftvnpllkvcfaddllpfn
faeprrefgrgairefvpagerslvipa

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1e6yE (E:)
sdtvdiyddrgkllesnvdimslaptrnaaiqsiimdtkrsvavnlagiqgalasgkmgg
kgrqilgrglnydivgnadaiaenvkklvqvdegddtnvikvkggkslliqspksriiag
adfmsattvgaaavtqtimdmfgtdpydapivksavwgsypqtmdlmggqvqgilsipqn
neglgfslrnimanhvaaisnrnamnasalssiyeqsgifemggavgmferhqllglayq
glnannllydivkengkdgtigtviesvvrraieagiisvdktapsgynfykandvpkwn
acaavgtlaatlvncgagraaqnvsstllyfndileketglpgcdygkvegtavgfsffs
hsiyggggpgvfngnhvvtrhsrgfaipcvcaavaldagtqmfsiestsgligdvfgaip
efrepikavagvl

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1e6yF (F:)
ayerqyypgatsvaanrrkhmsgkleklreisdedltavlghrapgsdypsthpplaemg
epacstrenvaatpgaaagdrvryiqfadsmynapatpyfrsyfaainfrgvdpgtlsgr
qivearerdmeqcakvqmeteitdhalagvrgatvhghsvrlqedgvmfdmldrrrleng
tiimdkdqvaipldrkvdlgkpmsseeaakrttiyrvdnvafrddaevvewvhrifdqrt
kfgfqpk