PDB entry 1e3d

View 1e3d on RCSB PDB site
Description: [nife] hydrogenase from desulfovibrio desulfuricans atcc 27774
Class: hydrogenase
Keywords: hydrogenase, crystal structure, molecular modelling, electron transfer
Deposited on 2000-06-14, released 2001-06-14
The last revision prior to the SCOP 1.75 freeze date was dated 2003-04-01, with a file datestamp of 2007-07-20.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.167
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: [nife] hydrogenase small subunit
    Species: Desulfovibrio desulfuricans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1e3da_
  • Chain 'B':
    Compound: [nife] hydrogenase large subunit
    Species: Desulfovibrio desulfuricans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1e3db_
  • Chain 'C':
    Compound: [nife] hydrogenase small subunit
    Species: Desulfovibrio desulfuricans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1e3dc_
  • Chain 'D':
    Compound: [nife] hydrogenase large subunit
    Species: Desulfovibrio desulfuricans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1e3dd_
  • Heterogens: MG, F3S, SF4, FSX, FNE, H2S, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1e3dA (A:)
altgsrpsvvylhaaectgcseallrtyqpfidtlildtisldyhetimaaageaaeeal
qaavngpdgficlvegaiptgmdnkygyiaghtmydicknilpkakavvsigtcacyggi
qaakpnptaakgindcyadlgvkainvpgcppnplnmvgtlvaflkgqkieldevgrpvm
ffgqsvhdlcerrkhfdagefapsfnseearkgwclydvgckgpetynncpkvlfnetnw
pvaaghpcigcsepnfwddmtpfyqn

    Sequence, based on observed residues (ATOM records): (download) 
    >1e3dA (A:)
srpsvvylhaaectgcseallrtyqpfidtlildtisldyhetimaaageaaeealqaav
ngpdgficlvegaiptgmdnkygyiaghtmydicknilpkakavvsigtcacyggiqaak
pnptaakgindcyadlgvkainvpgcppnplnmvgtlvaflkgqkieldevgrpvmffgq
svhdlcerrkhfdagefapsfnseearkgwclydvgckgpetynncpkvlfnetnwpvaa
ghpcigcsepnfwddmtpfyqn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1e3dB (B:)
sqvtktprsnytgpivvdpltrieghlrieveveggvikearscatlfrgietilkgrdp
rdaqhftqrtcgvctythalastrcledainkpipanatyirnlvlgnqfmhdhlvhfyh
lhaldfvdvtsalladpakaaklansisprkatteefaavqaklktfvasgqlgpftnay
flgghegyymdpeanlvctahylqalraqvevakgmavfgaknphtqftvaggvtcyeal
tperikqfrelyvkarafieevyipdlllvasyykdwgkiggtnnfmafgefpapggerd
lnsrwykpgviydrkvgsvqpfdpskieehvrhswyegkarapfegetnphftfmgdtdk
yswnkaprydghavetgplaqmlvayghnhktikptidavlgklnlgpealfstlgrtaa
rgiqtlviaqqmenwlneyennivkdkqivedyavptsargvgfadvsrgglshwmtied
gkidnfqlvvpttwnlgprddkgvpsaaeaalvgtpvadpkrpveilrtihsfdpciacs
th

    Sequence, based on observed residues (ATOM records): (download) 
    >1e3dB (B:)
tprsnytgpivvdpltrieghlrieveveggvikearscatlfrgietilkgrdprdaqh
ftqrtcgvctythalastrcledainkpipanatyirnlvlgnqfmhdhlvhfyhlhald
fvdvtsalladpakaaklansisprkatteefaavqaklktfvasgqlgpftnayflggh
egyymdpeanlvctahylqalraqvevakgmavfgaknphtqftvaggvtcyealtperi
kqfrelyvkarafieevyipdlllvasyykdwgkiggtnnfmafgefpapggerdlnsrw
ykpgviydrkvgsvqpfdpskieehvrhswyegkarapfegetnphftfmgdtdkyswnk
aprydghavetgplaqmlvayghnhktikptidavlgklnlgpealfstlgrtaargiqt
lviaqqmenwlneyennivkdkqivedyavptsargvgfadvsrgglshwmtiedgkidn
fqlvvpttwnlgprddkgvpsaaeaalvgtpvadpkrpveilrtihsfdpciacsth

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1e3dC (C:)
altgsrpsvvylhaaectgcseallrtyqpfidtlildtisldyhetimaaageaaeeal
qaavngpdgficlvegaiptgmdnkygyiaghtmydicknilpkakavvsigtcacyggi
qaakpnptaakgindcyadlgvkainvpgcppnplnmvgtlvaflkgqkieldevgrpvm
ffgqsvhdlcerrkhfdagefapsfnseearkgwclydvgckgpetynncpkvlfnetnw
pvaaghpcigcsepnfwddmtpfyqn

    Sequence, based on observed residues (ATOM records): (download) 
    >1e3dC (C:)
srpsvvylhaaectgcseallrtyqpfidtlildtisldyhetimaaageaaeealqaav
ngpdgficlvegaiptgmdnkygyiaghtmydicknilpkakavvsigtcacyggiqaak
pnptaakgindcyadlgvkainvpgcppnplnmvgtlvaflkgqkieldevgrpvmffgq
svhdlcerrkhfdagefapsfnseearkgwclydvgckgpetynncpkvlfnetnwpvaa
ghpcigcsepnfwddmtpfyqn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1e3dD (D:)
sqvtktprsnytgpivvdpltrieghlrieveveggvikearscatlfrgietilkgrdp
rdaqhftqrtcgvctythalastrcledainkpipanatyirnlvlgnqfmhdhlvhfyh
lhaldfvdvtsalladpakaaklansisprkatteefaavqaklktfvasgqlgpftnay
flgghegyymdpeanlvctahylqalraqvevakgmavfgaknphtqftvaggvtcyeal
tperikqfrelyvkarafieevyipdlllvasyykdwgkiggtnnfmafgefpapggerd
lnsrwykpgviydrkvgsvqpfdpskieehvrhswyegkarapfegetnphftfmgdtdk
yswnkaprydghavetgplaqmlvayghnhktikptidavlgklnlgpealfstlgrtaa
rgiqtlviaqqmenwlneyennivkdkqivedyavptsargvgfadvsrgglshwmtied
gkidnfqlvvpttwnlgprddkgvpsaaeaalvgtpvadpkrpveilrtihsfdpciacs
th

    Sequence, based on observed residues (ATOM records): (download) 
    >1e3dD (D:)
tprsnytgpivvdpltrieghlrieveveggvikearscatlfrgietilkgrdprdaqh
ftqrtcgvctythalastrcledainkpipanatyirnlvlgnqfmhdhlvhfyhlhald
fvdvtsalladpakaaklansisprkatteefaavqaklktfvasgqlgpftnayflggh
egyymdpeanlvctahylqalraqvevakgmavfgaknphtqftvaggvtcyealtperi
kqfrelyvkarafieevyipdlllvasyykdwgkiggtnnfmafgefpapggerdlnsrw
ykpgviydrkvgsvqpfdpskieehvrhswyegkarapfegetnphftfmgdtdkyswnk
aprydghavetgplaqmlvayghnhktikptidavlgklnlgpealfstlgrtaargiqt
lviaqqmenwlneyennivkdkqivedyavptsargvgfadvsrgglshwmtiedgkidn
fqlvvpttwnlgprddkgvpsaaeaalvgtpvadpkrpveilrtihsfdpciacsth