PDB entry 1e27

View 1e27 on RCSB PDB site
Description: nonstandard peptide binding of hla-b*5101 complexed with hiv immunodominant epitope km1(lppvvakei)
Class: immune system
Keywords: immune system, hla b51, hiv, MHC class I, histocompatibility complex
Deposited on 2000-05-18, released 2000-09-12
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.199
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: hla class I histocompatibility antigen heavy chain
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P18464 (0-275)
  Domains in SCOPe 2.06: d1e27a1, d1e27a2
• Chain 'B':
  Compound: beta-2 microglobulin light chain
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01884 (0-98)
  Domains in SCOPe 2.06: d1e27b_
• Chain 'C':
  Compound: hiv-1 peptide (lppvvakei)
  Species: Human immunodeficiency virus type 1, synthetic [TaxId:11676]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P24740 (0-8)
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1e27A (A:)
  gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprteprapwieqegpeyw
  drntqifktntqtyrenlrialryynqseagshtwqtmygcdvgpdgrllrghnqyaydg
  kdyialnedlsswtaadtaaqitqrkweaareaeqlrayleglcvewlrrhlengketlq
  radppkthvthhpvsdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
  fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >1e27B (B:)
  iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
  sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
  

  
  
• Chain 'C':
  No sequence available.