PDB entry 1e27

View 1e27 on RCSB PDB site
Description: nonstandard peptide binding of hla-b*5101 complexed with hiv immunodominant epitope km1(lppvvakei)
Class: immune system
Keywords: immune system, hla b51, hiv, MHC class I, histocompatibility complex
Deposited on 2000-05-18, released 2000-09-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.199
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hla class I histocompatibility antigen heavy chain
    Species: Homo sapiens [TaxId:9606]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1e27a1, d1e27a2
  • Chain 'B':
    Compound: beta-2 microglobulin light chain
    Species: Homo sapiens [TaxId:9606]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1e27b_
  • Chain 'C':
    Compound: hiv-1 peptide (lppvvakei)
    Species: Human immunodeficiency virus type 1, synthetic [TaxId:11676]
    Gene:
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1e27A (A:)
    gshsmryfytamsrpgrgeprfiavgyvddtqfvrfdsdaasprteprapwieqegpeyw
    drntqifktntqtyrenlrialryynqseagshtwqtmygcdvgpdgrllrghnqyaydg
    kdyialnedlsswtaadtaaqitqrkweaareaeqlrayleglcvewlrrhlengketlq
    radppkthvthhpvsdheatlrcwalgfypaeitltwqrdgedqtqdtelvetrpagdrt
    fqkwaavvvpsgeeqrytchvqheglpkpltlrwep
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1e27B (B:)
    iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
    sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
    

  • Chain 'C':
    No sequence available.