PDB entry 1e08

View 1e08 on RCSB PDB site
Description: structural model of the [fe]-hydrogenase/cytochrome c553 complex combining nmr and soft-docking
Deposited on 2000-03-13, released 2000-08-25
The last revision was dated 2019-11-27, with a file datestamp of 2019-11-22.
Experiment type: THEORY
Resolution: N/A
R-factor: N/A
AEROSPACI score: -5.88 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: [fe]-hydrogenase (large subunit)
    Species: Desulfovibrio desulfuricans [TaxId:876]
    Database cross-references and differences (RAF-indexed):
    • PDB 1E08 (0-370)
  • Chain 'D':
    Compound: [fe]-hydrogenase (small subunit)
    Species: Desulfovibrio desulfuricans [TaxId:876]
    Database cross-references and differences (RAF-indexed):
    • PDB 1E08 (0-87)
  • Chain 'E':
    Compound: cytochrome c553
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed):
    • PDB 1E08 (0-77)
  • Heterogens: SF4, PDT, FE2, CYN, CMO, ZN, HEC, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOP 1.57, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >1e08A (A:)
    fvqideakcigcdtcsqycptaaifgemgephsiphieacincgqclthcpenaiyeaqs
    wvpevekklkdgkvkciampapavryalgdafgmpvgsvttgkmlaalqklgfahcwdte
    ftadvtiweegsefverltkksdmplpqftsccpgwqkyaetyypellphfstckspigm
    ngalaktygaermkydpkqvytvsimpciakkyeglrpelkssgmrdidatlttrelaym
    ikkagidfaklpdgkrdslmgestggatifgvtggvmeaalrfayeavtgkkpdswdfka
    vrgldgikeatvnvggtdvkvavvhgakrfkqvcddvkagkspyhfieymacpggcvcgg
    gqpvmpgvlea
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >1e08D (D:)
    vkqikdymldringvygadakfpvrasqdntqvkalyksylekplghkshdllhthwfdk
    skgvkelttagklpnprasefegpypye
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >1e08E (E:)
    dgaalykscigchgadgskaamgsakpvkgqgaeelykkmkgyadgsyggerkammtnav
    kkysdeelkaladymskl