PDB entry 1e08

View 1e08 on RCSB PDB site
Description: Structural model of the [Fe]-Hydrogenase/cytochrome c553 complex combining NMR and soft-docking
Class: hydrogenase
Keywords: hydrogenase, cytochrome c553, electron transfer complex
Deposited on 2000-03-13, released 2000-08-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-27, with a file datestamp of 2019-11-22.
Experiment type: THEORY
Resolution: N/A
R-factor: N/A
AEROSPACI score: -5.91 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: [fe]-hydrogenase (large subunit)
    Species: Desulfovibrio desulfuricans [TaxId:876]
    Database cross-references and differences (RAF-indexed):
    • PDB 1E08 (0-370)
    Domains in SCOPe 2.08: d1e08a_
  • Chain 'D':
    Compound: [fe]-hydrogenase (small subunit)
    Species: Desulfovibrio desulfuricans [TaxId:876]
    Database cross-references and differences (RAF-indexed):
    • PDB 1E08 (0-87)
    Domains in SCOPe 2.08: d1e08d_
  • Chain 'E':
    Compound: cytochrome c553
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed):
    • PDB 1E08 (0-77)
    Domains in SCOPe 2.08: d1e08e_
  • Heterogens: SF4, PDT, FE2, CYN, CMO, ZN, HEC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1e08A (A:)
fvqideakcigcdtcsqycptaaifgemgephsiphieacincgqclthcpenaiyeaqs
wvpevekklkdgkvkciampapavryalgdafgmpvgsvttgkmlaalqklgfahcwdte
ftadvtiweegsefverltkksdmplpqftsccpgwqkyaetyypellphfstckspigm
ngalaktygaermkydpkqvytvsimpciakkyeglrpelkssgmrdidatlttrelaym
ikkagidfaklpdgkrdslmgestggatifgvtggvmeaalrfayeavtgkkpdswdfka
vrgldgikeatvnvggtdvkvavvhgakrfkqvcddvkagkspyhfieymacpggcvcgg
gqpvmpgvlea

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1e08D (D:)
vkqikdymldringvygadakfpvrasqdntqvkalyksylekplghkshdllhthwfdk
skgvkelttagklpnprasefegpypye

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1e08E (E:)
dgaalykscigchgadgskaamgsakpvkgqgaeelykkmkgyadgsyggerkammtnav
kkysdeelkaladymskl