PDB entry 1e08

View 1e08 on RCSB PDB site
Description: structural model of the [fe]-hydrogenase/cytochrome c553 complex combining nmr and soft-docking
Class: hydrogenase
Keywords: hydrogenase, cytochrome c553, electron transfer complex
Deposited on 2000-03-13, released 2000-08-25
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: THEORY
Resolution: N/A
R-factor: N/A
AEROSPACI score: -5.92 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: [fe]-hydrogenase (large subunit)
    Species: Desulfovibrio desulfuricans [TaxId:876]
    Database cross-references and differences (RAF-indexed):
    • PDB 1E08 (Start-52)
    Domains in SCOPe 2.07: d1e08a_
  • Chain 'D':
    Compound: [fe]-hydrogenase (small subunit)
    Species: Desulfovibrio desulfuricans [TaxId:876]
    Domains in SCOPe 2.07: d1e08d_
  • Chain 'E':
    Compound: cytochrome c553
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Domains in SCOPe 2.07: d1e08e_
  • Heterogens: SF4, PDT, FE2, CYN, CMO, ZN, HEM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1e08A (A:)
    fvqideakcigcdtcsqycptaaifgemgephsiphieacincgqclthcpenaiyeaqs
    wvpevekklkdgkvkciampapavryalgdafgmpvgsvttgkmlaalqklgfahcwdte
    ftadvtiweegsefverltkksdmplpqftsccpgwqkyaetyypellphfstckspigm
    ngalaktygaermkydpkqvytvsimpciakkyeglrpelkssgmrdidatlttrelaym
    ikkagidfaklpdgkrdslmgestggatifgvtggvmeaalrfayeavtgkkpdswdfka
    vrgldgikeatvnvggtdvkvavvhgakrfkqvcddvkagkspyhfieymacpggcvcgg
    gqpvmpgvlea
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1e08D (D:)
    vkqikdymldringvygadakfpvrasqdntqvkalyksylekplghkshdllhthwfdk
    skgvkelttagklpnprasefegpypye
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1e08E (E:)
    dgaalykscigchgadgskaamgsakpvkgqgaeelykkmkgyadgsyggerkammtnav
    kkysdeelkaladymskl