PDB entry 1dzb

View 1dzb on RCSB PDB site
Description: crystal structure of phage library-derived single-chain fv fragment 1f9 in complex with turkey egg-white lysozyme
Class: complex (antibody antigen)
Keywords: single-domain antibody, turkey egg-white lysozyme, antibody-protein complex, single-chain fv fragment
Deposited on 2000-02-23, released 2000-11-02
The last revision prior to the SCOP 1.73 freeze date was dated 2000-11-02, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.225
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: scfv fragment 1f9
    Species: Mus musculus
    Domains in SCOP 1.73: d1dzba1, d1dzba2
  • Chain 'B':
    Compound: scfv fragment 1f9
    Species: Mus musculus
    Domains in SCOP 1.73: d1dzbb1, d1dzbb2
  • Chain 'X':
    Compound: turkey egg-white lysozyme c
    Species: Meleagris gallopavo
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1dzbx_
  • Chain 'Y':
    Compound: turkey egg-white lysozyme c
    Species: Meleagris gallopavo
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1dzby_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1dzbA (A:)
qvklqqsgaelvkpgasvklsctasgfnikdtymhwvkqrpeqglewigridpangntky
dpkfqgkatitadtssntaylqlssltsedtavyycarwdwyfdvwgqgttvtvssgggg
sggggsggggsdieltqspssmytslgervtitckasqdinsylrwfqqkpgkspktliy
yatsladgvpsrfsgsgsgqdysltisslesddtttyyclqhgespytfgggtkleikra
aaeqkliseedln

    Sequence, based on observed residues (ATOM records): (download) 
    >1dzbA (A:)
qvklqqsgaelvkpgasvklsctasgfnikdtymhwvkqrpeqglewigridpangntky
dpkfqgkatitadtssntaylqlssltsedtavyycarwdwyfdvwgqgttvtvssgdie
ltqspssmytslgervtitckasqdinsylrwfqqkpgkspktliyyatsladgvpsrfs
gsgsgqdysltisslesddtttyyclqhgespytfgggtkleik

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1dzbB (B:)
qvklqqsgaelvkpgasvklsctasgfnikdtymhwvkqrpeqglewigridpangntky
dpkfqgkatitadtssntaylqlssltsedtavyycarwdwyfdvwgqgttvtvssgggg
sggggsggggsdieltqspssmytslgervtitckasqdinsylrwfqqkpgkspktliy
yatsladgvpsrfsgsgsgqdysltisslesddtttyyclqhgespytfgggtkleikra
aaeqkliseedln

    Sequence, based on observed residues (ATOM records): (download) 
    >1dzbB (B:)
qvklqqsgaelvkpgasvklsctasgfnikdtymhwvkqrpeqglewigridpangntky
dpkfqgkatitadtssntaylqlssltsedtavyycarwdwyfdvwgqgttvtvssgdie
ltqspssmytslgervtitckasqdinsylrwfqqkpgkspktliyyatsladgvpsrfs
gsgsgqdysltisslesddtttyyclqhgespytfgggtkleik

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dzbX (X:)
kvygrcelaaamkrlgldnyrgyslgnwvcaakfesnfnthatnrntdgstdygilqins
rwwcndgrtpgsknlcnipcsallssditasvncakkiasggngmnawvawrnrckgtdv
hawirgcrl

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1dzbY (Y:)
kvygrcelaaamkrlgldnyrgyslgnwvcaakfesnfnthatnrntdgstdygilqins
rwwcndgrtpgsknlcnipcsallssditasvncakkiasggngmnawvawrnrckgtdv
hawirgcrl