PDB entry 1dtj

View 1dtj on RCSB PDB site
Description: crystal structure of nova-2 kh3 k-homology RNA-binding domain
Class: immune system
Keywords: KH domain, alpha-beta fold RNA-binding motif
Deposited on 2000-01-12, released 2000-02-18
The last revision prior to the SCOP 1.73 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.225
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-binding neurooncological ventral antigen 2
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UNW9 (1-End)
      • expression artifact (0)
      • engineered (6)
    Domains in SCOP 1.73: d1dtja_
  • Chain 'B':
    Compound: RNA-binding neurooncological ventral antigen 2
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UNW9 (1-75)
      • expression artifact (0)
      • engineered (6)
    Domains in SCOP 1.73: d1dtjb_
  • Chain 'C':
    Compound: RNA-binding neurooncological ventral antigen 2
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UNW9 (1-End)
      • expression artifact (0)
      • engineered (6)
    Domains in SCOP 1.73: d1dtjc_
  • Chain 'D':
    Compound: RNA-binding neurooncological ventral antigen 2
    Species: HOMO SAPIENS
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9UNW9 (1-End)
      • expression artifact (0)
      • engineered (6)
    Domains in SCOP 1.73: d1dtjd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1dtjA (A:)
mkelvemavpenlvgailgkggktlveyqeltgariqiskkgeflpgtrnrrvtitgspa
atqaaqylisqrvtye

    Sequence, based on observed residues (ATOM records): (download) 
    >1dtjA (A:)
mkelvemavpenlvgailgkggktlveyqeltgariqiskkgeflpgtrnrrvtitgspa
atqaaqylisqrvt

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1dtjB (B:)
mkelvemavpenlvgailgkggktlveyqeltgariqiskkgeflpgtrnrrvtitgspa
atqaaqylisqrvtye

    Sequence, based on observed residues (ATOM records): (download) 
    >1dtjB (B:)
mkelvemavpenlvgaitlveyqeltgariqistrnrrvtitgspaatqaaqylisqrvt
ye

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1dtjC (C:)
mkelvemavpenlvgailgkggktlveyqeltgariqiskkgeflpgtrnrrvtitgspa
atqaaqylisqrvtye

    Sequence, based on observed residues (ATOM records): (download) 
    >1dtjC (C:)
mkelvemavpenlvgailgkggktlveyqeltgariqistrnrrvtitgspaatqaaqyl
isqrvt

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1dtjD (D:)
mkelvemavpenlvgailgkggktlveyqeltgariqiskkgeflpgtrnrrvtitgspa
atqaaqylisqrvtye

    Sequence, based on observed residues (ATOM records): (download) 
    >1dtjD (D:)
mkelvemavpenlvgailgkggktlveyqeltgariqisrnrrvtitgspaatqaaqyli
sqrv