PDB entry 1dqm

View 1dqm on RCSB PDB site
Description: crystal structure of anti-lysozyme antibody
Class: immune system
Keywords: antibody, hen egg white lysozyme, IMMUNE SYSTEM
Deposited on 2000-01-04, released 2000-01-19
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.225
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: anti-lysozyme antibody hyhel-63 (heavy chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1DQM (Start-209)
    Domains in SCOPe 2.06: d1dqmh1, d1dqmh2
  • Chain 'L':
    Compound: anti-lysozyme antibody hyhel-63 (light chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • GB CAA72328 (96-213)
    Domains in SCOPe 2.06: d1dqml1, d1dqml2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >1dqmH (H:)
    evqlqesgpslvkpsqtlsltcsvtgdsvtsdywswirkfpgnkleymgyisysgstyyh
    pslksrisitrdtsknqyylqlnsvttedtatyycaswggdvwgagttvtvssakttaps
    vyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsss
    vtvtsstwpsqsitcnvahpasstkvdkki
    

    Sequence, based on observed residues (ATOM records): (download)
    >1dqmH (H:)
    vqlqesgpslvkpsqtlsltcsvtgdsvtsdywswirkfpgnkleymgyisysgstyyhp
    slksrisitrdtsknqyylqlnsvttedtatyycaswggdvwgagttvtvssakttapsv
    yplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdlytlsssv
    tvtsstwpsqsitcnvahpasstkvdkki
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dqmL (L:)
    divltqspatlsvtpgdsvslscrasqsisnnlhwyqqkshesprllikyasqsisgips
    rfsgsgsgtdftlsinsvetedfgmyfcqqsnswpytfgggtkleikradaaptvsifpp
    sseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysmsstlt
    ltkdeyerhnsytceathktstspivksfnrnec