PDB entry 1dm0

View 1dm0 on RCSB PDB site
Description: shiga toxin
Class: toxin
Keywords: ab5 structure, polypeptide a, blocking, active site, toxin
Deposited on 1999-12-13, released 1999-12-30
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-10-04, with a file datestamp of 2017-09-29.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: shiga toxin a subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0a_
  • Chain 'B':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0b_
  • Chain 'C':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0c_
  • Chain 'D':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0d_
  • Chain 'E':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0e_
  • Chain 'F':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0f_
  • Chain 'G':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0g_
  • Chain 'H':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0h_
  • Chain 'I':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0i_
  • Chain 'J':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0j_
  • Chain 'K':
    Compound: shiga toxin b subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0k_
  • Chain 'L':
    Compound: shiga toxin a subunit
    Species: Shigella dysenteriae [TaxId:622]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1dm0l_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1dm0A (A:)
    keftldfstaktyvdslnvirsaigtplqtissggtsllmidsgtgdnlfavdvrgidpe
    egrfnnlrlivernnlyvtgfvnrtnnvfyrfadfshvtfpgttavtlsgdssyttlqrv
    agisrtgmqinrhslttsyldlmshsgtsltqsvaramlrfvtvtaealrfrqiqrgfrt
    tlddlsgrsyvmtaedvdltlnwgrlssvlpdyhgqdsvrvgrisfgsinailgsvalil
    nchhhasrvarmasdefpsmcpadgrvrgithnkilwdsstlgailm
    

    Sequence, based on observed residues (ATOM records): (download)
    >1dm0A (A:)
    keftldfstaktyvdslnvirsaigtplqtissggtsllmiddnlfavdvrgidpeegrf
    nnlrlivernnlyvtgfvnrtnnvfyrfadfshvtfpgttavtlsgdssyttlqrvagis
    rtgmqinrhslttsyldlmshsgtsltqsvaramlrfvtvtaealrfrqiqrgfrttlds
    yvmtaedvdltlnwgrlssvlpdyhgqdsvrvgrisfgsinailgsvalilncfpsmcpa
    dgrvrgithnkilwdsstlgailm
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0B (B:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0C (C:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0D (D:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0E (E:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0F (F:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0G (G:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0H (H:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0I (I:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0J (J:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1dm0K (K:)
    tpdcvtgkveytkyndddtftvkvgdkelftnrwnlqslllsaqitgmtvtiktnachng
    ggfsevifr
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >1dm0L (L:)
    keftldfstaktyvdslnvirsaigtplqtissggtsllmidsgtgdnlfavdvrgidpe
    egrfnnlrlivernnlyvtgfvnrtnnvfyrfadfshvtfpgttavtlsgdssyttlqrv
    agisrtgmqinrhslttsyldlmshsgtsltqsvaramlrfvtvtaealrfrqiqrgfrt
    tlddlsgrsyvmtaedvdltlnwgrlssvlpdyhgqdsvrvgrisfgsinailgsvalil
    nchhhasrvarmasdefpsmcpadgrvrgithnkilwdsstlgailm
    

    Sequence, based on observed residues (ATOM records): (download)
    >1dm0L (L:)
    keftldfstaktyvdslnvirsaigtplqtissggtsllmidnlfavdvrgidpeegrfn
    nlrlivernnlyvtgfvnrtnnvfyrfadfshvtfpgttavtlsgdssyttlqrvagisr
    tgmqinrhslttsyldlmshsgtsltqsvaramlrfvtvtaealrfrqiqrgfrttlsyv
    mtaedvdltlnwgrlssvlpdyhgqdsvrvgrisfgsinailgsvalilncfpsmcpadg
    rvrgithnkilwdsstlgailm