PDB entry 1dkf

View 1dkf on RCSB PDB site
Description: crystal structure of a heterodimeric complex of rar and rxr ligand-binding domains
Class: hormone/growth factor receptor
Keywords: HELICAL SANDWICH, HETERODIMER, PROTEIN-LIGAND COMPLEX, HORMONE/GROWTH FACTOR RECEPTOR, Structural Proteomics in Europe, SPINE, Structural Genomics
Deposited on 1999-12-07, released 2000-04-19
The last revision prior to the SCOPe 2.01 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.203
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (retinoid x receptor-alpha)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P28700 (0-232)
      • engineered (88)
    Domains in SCOPe 2.01: d1dkfa_
  • Chain 'B':
    Compound: protein (retinoic acid receptor-alpha)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d1dkfb_
  • Heterogens: BMS, OLA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1dkfA (A:)
sanedmpvekileaelavepktetyveanmglnpsspndpvtnicqaadkqlftlvewak
riphfselplddqvillragwnelliasashrsiavkdgillatglhvhrnsahsagvga
ifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayc
khkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmemlea

    Sequence, based on observed residues (ATOM records): (download) 
    >1dkfA (A:)
sanedmpvekileaelaveppndpvtnicqaadkqlftlvewakriphfselplddqvil
lragwnelliasashrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdm
qmdktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklll
rlpalrsiglkclehlfffkligdtpidtflmemlea

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1dkfB (B:)
pevgeliekvrkahqetfpalcqlgkyttnnsseqrvsldidlwdkfselstkciiktve
fakqlpgfttltiadqitllkaacldililrictrytpeqdtmtfsdgltlnrtqmhnag
fgpltdlvfafanqllplemddaetgllsaiclicgdrqdleqpdrvdmlqepllealkv
yvrkrrpsrphmfpkmlmkitdlrsisakgaervitlkmeipgsmppliqemlen

    Sequence, based on observed residues (ATOM records): (download) 
    >1dkfB (B:)
pevgeliekvrkahqetfpalcqlgkyttseqrvsldidlwdkfselstkciiktvefak
qlpgfttltiadqitllkaacldililrictrytpeqdtmtfsdgltlnrtqmhnagfgp
ltdlvfafanqllplemddaetgllsaiclicgdrqdleqpdrvdmlqepllealkvyvr
krrpsrphmfpkmlmkitdlrsisakgaervitlkmeipgsmppliqemlen