PDB entry 1dio

View 1dio on RCSB PDB site
Description: diol dehydratase-cyanocobalamin complex from klebsiella oxytoca
Class: lyase
Keywords: coenzyme b12, propanediol, potassium ion, tim barrel, lyase
Deposited on 1999-01-27, released 2000-01-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-10-24, with a file datestamp of 2012-10-19.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.188
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (diol dehydratase)
    Species: Klebsiella oxytoca, synthetic [TaxId:571]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dioa_
  • Chain 'B':
    Compound: protein (diol dehydratase)
    Species: Klebsiella oxytoca, synthetic [TaxId:571]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1diob_
  • Chain 'E':
    Compound: protein (diol dehydratase)
    Species: Klebsiella oxytoca, synthetic [TaxId:571]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1dioe_
  • Chain 'G':
    Compound: protein (diol dehydratase)
    Species: Klebsiella oxytoca, synthetic [TaxId:571]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1diog_
  • Chain 'L':
    Compound: protein (diol dehydratase)
    Species: Klebsiella oxytoca, synthetic [TaxId:571]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1diol_
  • Chain 'M':
    Compound: protein (diol dehydratase)
    Species: Klebsiella oxytoca, synthetic [TaxId:571]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1diom_
  • Heterogens: K, B12, PGO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1dioA (A:)
mrskrfealakrpvnqdgfvkewieegfiamespndpkpsikivngavteldgkpvsdfd
lidhfiaryginlnraeevmamdsvklanmlcdpnvkrseivplttamtpakivevvshm
nvvemmmamqkmrarrtpsqqahvtnvkdnpvqiaadaaegawrgfdeqettvavaryap
fnaiallvgsqvgrpgvltqcsleeatelklgmlghtcyaetisvygtepvftdgddtpw
skgflassyasrglkmrftsgsgsevqmgyaegksmlylearciyitkaagvqglqngsv
scigvpsavpsgiravlaenlicssldlecassndqtfthsdmrrtarllmqflpgtdfi
ssgysavpnydnmfagsnedaedfddynviqrdlkvdgglrpvreedviairnkaaralq
avfagmglppitdeeveaatyahgskdmpernivedikfaqeiinknrnglevvkalaqg
gftdvaqdmlniqkakltgdylhtsaiivgdgqvlsavndvndyagpatgyrlqgerwee
iknipgaldpneid

    Sequence, based on observed residues (ATOM records): (download) 
    >1dioA (A:)
mrskrfealakrpvnqdgfvkewieegfiamespndpkpsikivngavteldgkpvsdfd
lidhfiaryginlnraeevmamdsvklanmlcdpnvkrseivplttamtpakivevvshm
nvvemmmamqkmrarrtpsqqahvtnvkdnpvqiaadaaegawrgfdeqettvavaryap
fnaiallvgsqvgrpgvltqcsleeatelklgmlghtcyaetisvygtepvftdgddtpw
skgflassyasrglkmrftsgsgsevqmgyaegksmlylearciyitkaagvqglqngsv
scigvpsavpsgiravlaenlicssldlecassndqtfthsdmrrtarllmqflpgtdfi
ssgysavpnydnmfagsnedaedfddynviqrdlkvdgglrpvreedviairnkaaralq
avfagmglppitdeeveaatyahgskdmpernivedikfaqeiinknrnglevvkalaqg
gftdvaqdmlniqkakltgdylhtsaiivgdgqvlsavndvndyagpatgyrlqgerwee
iknipgaldpn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1dioB (B:)
meinekllrqiiedvlsemkgsdkpvsfnapaasaapqatppagdgfltevgearqgtqq
deviiavgpafglaqtvnivgiphksilreviagieeegikarvircfkssdvafvaveg
nrlsgsgisigiqskgttvihqqglpplsnlelfpqaplltletyrqigknaaryakres
pqpvptlndqmarpkyqaksailhiketkyvvtgknpqelrval

    Sequence, based on observed residues (ATOM records): (download) 
    >1dioB (B:)
gfltevgearqgtqqdeviiavgpafglaqtvnivgiphksilreviagieeegikarvi
rcfkssdvafvavegnrlsgsgisigiqskgttvihqqglpplsnlelfpqaplltlety
rqigknaaryakrespqpvptlndqmarpkyqaksailhiketkyvvtgknpqelrval

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1dioE (E:)
meinekllrqiiedvlsemkgsdkpvsfnapaasaapqatppagdgfltevgearqgtqq
deviiavgpafglaqtvnivgiphksilreviagieeegikarvircfkssdvafvaveg
nrlsgsgisigiqskgttvihqqglpplsnlelfpqaplltletyrqigknaaryakres
pqpvptlndqmarpkyqaksailhiketkyvvtgknpqelrval

    Sequence, based on observed residues (ATOM records): (download) 
    >1dioE (E:)
gfltevgearqgtqqdeviiavgpafglaqtvnivgiphksilreviagieeegikarvi
rcfkssdvafvavegnrlsgsgisigiqskgttvihqqglpplsnlelfpqaplltlety
rqigknaaryakrespqpvptlndqmarpkyqaksailhiketkyvvtgknpqelrval

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1dioG (G:)
mntdaiesmvrdvlsrmnslqgeapaaapaaggasrsarvsdyplankhpewvktatnkt
lddftlenvlsnkvtaqdmritpetlrlqasiakdagrdrlamnferaaeltavpddril
eiynalrpyrstkeellaiaddlesryqakicaafvreaatlyverkklkgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >1dioG (G:)
sarvsdyplankhpewvktatnktlddftlenvlsnkvtaqdmritpetlrlqasiakda
grdrlamnferaaeltavpddrileiynalrpyrstkeellaiaddlesryqakicaafv
reaatlyverkklkgdd

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >1dioL (L:)
mrskrfealakrpvnqdgfvkewieegfiamespndpkpsikivngavteldgkpvsdfd
lidhfiaryginlnraeevmamdsvklanmlcdpnvkrseivplttamtpakivevvshm
nvvemmmamqkmrarrtpsqqahvtnvkdnpvqiaadaaegawrgfdeqettvavaryap
fnaiallvgsqvgrpgvltqcsleeatelklgmlghtcyaetisvygtepvftdgddtpw
skgflassyasrglkmrftsgsgsevqmgyaegksmlylearciyitkaagvqglqngsv
scigvpsavpsgiravlaenlicssldlecassndqtfthsdmrrtarllmqflpgtdfi
ssgysavpnydnmfagsnedaedfddynviqrdlkvdgglrpvreedviairnkaaralq
avfagmglppitdeeveaatyahgskdmpernivedikfaqeiinknrnglevvkalaqg
gftdvaqdmlniqkakltgdylhtsaiivgdgqvlsavndvndyagpatgyrlqgerwee
iknipgaldpneid

    Sequence, based on observed residues (ATOM records): (download) 
    >1dioL (L:)
mrskrfealakrpvnqdgfvkewieegfiamespndpkpsikivngavteldgkpvsdfd
lidhfiaryginlnraeevmamdsvklanmlcdpnvkrseivplttamtpakivevvshm
nvvemmmamqkmrarrtpsqqahvtnvkdnpvqiaadaaegawrgfdeqettvavaryap
fnaiallvgsqvgrpgvltqcsleeatelklgmlghtcyaetisvygtepvftdgddtpw
skgflassyasrglkmrftsgsgsevqmgyaegksmlylearciyitkaagvqglqngsv
scigvpsavpsgiravlaenlicssldlecassndqtfthsdmrrtarllmqflpgtdfi
ssgysavpnydnmfagsnedaedfddynviqrdlkvdgglrpvreedviairnkaaralq
avfagmglppitdeeveaatyahgskdmpernivedikfaqeiinknrnglevvkalaqg
gftdvaqdmlniqkakltgdylhtsaiivgdgqvlsavndvndyagpatgyrlqgerwee
iknipgaldpn

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1dioM (M:)
mntdaiesmvrdvlsrmnslqgeapaaapaaggasrsarvsdyplankhpewvktatnkt
lddftlenvlsnkvtaqdmritpetlrlqasiakdagrdrlamnferaaeltavpddril
eiynalrpyrstkeellaiaddlesryqakicaafvreaatlyverkklkgdd

    Sequence, based on observed residues (ATOM records): (download) 
    >1dioM (M:)
sarvsdyplankhpewvktatnktlddftlenvlsnkvtaqdmritpetlrlqasiakda
grdrlamnferaaeltavpddrileiynalrpyrstkeellaiaddlesryqakicaafv
reaatlyverkklkgdd